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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006150 ID=TCONS_00006150|Name=TCONS_00006150|organism=Clytia hemisphaerica|type=transcript|length=1559bp GTTTTAGACAACAATGAAAACTGAATACAAGAGAAATGATGATTGGTATC AAAGCTAACACATTCTCCATAAAGTTGCTAAGGTGACACACACTAAACAA GCCTAcaacaaaaagaatttccaaaatctttttagaTTACTCAACTTttg gaaacaaaagaaacaaagttGTAAGGAATCATATATTGTGATTTGATTTA TCAAGATAACAGGAATGGCAATCAGAAAATGCTTTCGATTTTTCCTCATT CTTTTGTTTATCATAAACATAAACTTGATTCATTGTTTAACGCCAATCCG CCTCGGAGTCGCTATACCATGGTCAGGAAAGAACTGGGATGCCGGACCTC GATTTGCATCCGGAATATCTATAGCGGTTGAAAAGATAAATGCGGATCCA ACACTTCTTCCTGGATATAATATCTCGTTTATTTGGAAAGATTCGCAATG TGATGAGAAAAGAACTCTGGGAGTAATTGCTGATATGCTGAAAGATGATC AATTCCCGGTTAATGCCCTCATCGGGCCTGCATGTAGCGATGGTTGCCGA TCGGGTTCCTATTTAGCTGATAATTGGAACGTCCCGATGATATCGTACGG ATGTGCAGCTAGTTTCTTTTCAGTGCCGCAGAAATTCCCGAATTTTGCCA GAACTGTCGGCGTTTACTCAAAATCGGGACATATTTTCGTAAATTTGATG AAAACTTATAAATGGACACGTATTGCGATTTTGACACCGTCGTCGGGTAT TTGGTCGTCGATTATGAACGGCGTACGGAACGATATAGAGGCGGAAGACG GACTTCAAGTTccgttctttcaaaatttcaataaagaTTCAGTTTCAGAT TCGTTCTTGAAGAGACAGCTGGAAGATGCAAAAGAACAAGCACACAtatt tttgttgGGCGGCTACAAAGCAACCATTCTCAAAGTCATGAAACAAGCCA AGAAGATTGGATTACTGCGTCCTGGGTATGCTTTCATCTCTTATGAGCTT CTGATTGATAAATGTGTCTTACCAAACAAGACAGAAGCAGAAGACTGTGA ATTACTTGAAGGGATGCTAGATATTAGCTTGTTCGTACCGCAAAATGAAG CGTACCAGAAATTTGCGAATTTGGTTCGAAAAAAGATGGCGGAGGAACCG TTTAATAGATTTATGGCACCTGAAGAGCCGgttgagATTTACGCTGCTAT GTTACACGATGCTGCTCTGCTTTACGCGCATGCGCTGAACAAAACATTGA ATATGAATGGATCAATTTTGGATGGCCGTCTCATTATTAACAATACGTTA AATTATACTTTCGAAGGAGCATCGGGTACAGTTGTCATTGATCACGTTGG TGATCGTGCATCGGCTCTCGTCGTAAAGAACGTACATAACGGTCGGTACC AACGAACAGCCAATTTCTTCGTTACCGAGAAACGACTTCAAGTTCTCAAC AATACAGTTGTATGGCCTGGTAAAACAACTGCTATCCCACTTGGGAGACC AGAATGCGATTTTGATAACCGGTTATGCCCACCCACTGAGCCCTGGGTTT ACGTTGTGG Run BLAST on NCBI transcript from alignment at sc0000063:217209..224199- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006150 ID=TCONS_00006150|Name=TCONS_00006150|organism=Clytia hemisphaerica|type=transcript|length=6991bp|location=Sequence derived from alignment at sc0000063:217209..224199- (Clytia hemisphaerica) GTTTTAGACAACAATGAAAACTGAATACAAGAGAAATGATGATTGGTATC
AAAGCTAACACATTCTCCATAAAGTTGCTAAGGTGACACACACTAAACAA
GCCTACAACAAAAAGAATTTCCAAAATCTTTTTAGATTACTCAACTTTTG
GAAACAAAAGAAACAAAGTTGTAAGGAATCATATATTGTGATTTGATTTA
TCAAGATAACAGGAATGGCAATCAGAAAATGCTTTCGATTTTTCCTCATT
CTTTTGTTTATCATAAACATAAACTTGATTCATTGTTTAACGCCAATCCG
CCTCGGAGTCGCTATACCATGGTCAGGAAAGAACTGGGATGCCGGACCTC
GATTTGCATCCGGAATATCTATAGCGGTTGAAAAGATAAATGCGGATCCA
ACACTTCTTCCTGGATATAATATCTCGTTTATTTGGAAAGATTCGCAATG
TGATGAGAAAAGAACTCTGGGAGTAATTGCTGATATGCTGAAAGATGATC
AATTCCCGGTTAATGCCCTCATCGGGCCTGCATGTAGCGATGGTTGCCGA
TCGGGTTCCTATTTAGCTGATAATTGGAACGTCCCGATGATATCGTACGG
ATGTGCAGCTAGTTTCTTTTCAGTGCCGCAGAAATTCCCGAATTTTGCCA
GAACTGTCGGCGTTTACTCAAAATCGGGACATATTTTCGTAAATTTGATG
AAAACTTATAAATGGACACGTATTGCGATTTTGACACCGTCGTCGGGTAT
TTGGTCGTCGATTATGAACGGCGTACGGAACGATATAGAGGCGGAAGACG
GACTTCAAGTTCCGTTCTTTCAAAATTTCAATAAAGATTCAGTTTCAGAT
TCGTTCTTGAAGAGACAGCTGGAAGATGCAAAAGAACAAGCACACAGTAA
GTTTTATGAGAACAATTTTATAAGAACAATAAGGCTCAAAATCACCAAAA
AATAAGAACAATTTATGAACAACATGTCTGAAATTACTCAAATTCAAGCA
ATTTAAGAGTCAAAGTAGTAGAAATTGGGTATAACGCCCAAAATACGTCA
ATTTTACCCTATAATAAGAGCAAGATAAGAACAATTTGAGGCCCAAAAGT
GGAAAAAAACATTAAAAACAGCCGAGCCTCAGAAAAATTTTACTGGTTTT
ATAATAAAAAGTGTATTCTATTAAATAACCGAGTTAGAAAGTAATGCCAA
AATTTTATTAAATCGTAAATCGTTAAGATTCGGCTGTATATTTTGCAAAT
CTAAAATCATCAGCAATAGATGGACTTTTTGGTCTGATTAGAAAACTTTA
ACCCTGTGTCGATAACGCCTTTTAAGACCCTTAGACTTTTATATTCAAAA
AGTTCAAAGATTATAACACCTCCGTGTCACAGACCCGCTGAAAATTTGCC
CAAAATTCGTCCCCGGTAAGAAAAATACCCCTACTGGCACACAACGTTGT
TTCGACGTTCATCTAAAGTTATATGGACGTTATGAACATTAGATAAACGT
TAAAACAACGTTGTGTGCCAGCTGGGACCCTACAATTTCAACCCCAATTT
AGAAATTGACTTTGAATTCATTCCCATTCGAAAGTAAGTGTAAAAATTGT
ACACTAAAACCACCCCTACTAGATTATTCAACTTAGGTGTTATAGGAACA
ATAGAATTTTTATCCCCATCGGGATTTTGATAAAAAGTTTTATCGCTGCT
GAAAATGTTTCACAGGGGCTAGGTATGAGACAGGGGTGTAATGCATTAAG
TCCTCCCAGCAGACACACGACGTTGTTTCAACGTTTTTCTAACATTCACA
ACGTCCATATAACGTTAGATAAACGTTGAAACAACGTTGTGTGCCAGCTG
GGCTGTTGTTTACTTTTGTTACTGAAGCGCTTTCAATGTAAAACTTACAC
CGGGTACGGGATTGACCAATGAATTTTCTCTGAGGCGAAAATAAAAAAAT
GTAGTGTTTCCGCAAACCAGCCGGGCGAAGGAAAAAAGCAGTAAGCCCTG
AATACTAATGTATCAACTACTAACGAAGTCTGCGGCTGGGTCAGAGAATT
ATTTTTCTTCACCCGGCCGGTTTCCGGAAACACTACATTTTTTTATTTTC
TCTGATGAAAAATTTTCTCTATTTTAAGTATTTTTGTTGGGCGGCTACAA
AGCAACCATTCTCAAAGTCATGAAACAAGCCAAGAAGATTGGATTACTGC
GTCCTGGGTATGCTTTCATCTCTTATGAGCTTCTGATTGATAAATGTGTC
TTACCAAACAAGACAGAAGCAGAAGACTGTGAATTACTTGAAGGGATGCT
AGATATTAGCTTGTTCGTACCGCAAAATGAAGCGTACCAGAAATTTGCGA
ATTTGGTTCGAAAAAAGATGGCGGAGGAACCGTTTAATAGATTTATGGCA
CCTGAAGAGCCGGTAAGTGTTTATCTTCACGTTTTCTTGAGAAAAGAAAC
TAACGACAATCCATGACTAGGTTTGCAGATTGATGGGTATGTCCGAGTAA
AAGTCCGAAAACCGACTCTTTGAGAGAATGAATTCTGACGTTTTTGTGAC
CCTTTGAGAGACTGTTTTGACAATTTTTAGCTCAAAATTAGCAGACTTTT
AAAGTGGATTTTTTATATTTGCTATTTTTTAAACTGCTATTTTTACGTTC
ACCAAATTTCGAAGTCTTTAATTCGGATAAATTTTTCTTGCCCCATCTTC
CAATCAACCGTCTATAATAAACCCAAAAGAGAACAGAAATTGCTTCGAAT
AACTGAAAGCTCGAGTAACTTAAGTTCAAAGTGTTTTTTCCTGAGTTGGG
TAAGCAGATTAAAGAGGGAACACCATCACATTAACTGAATTGTTCGAATA
AGTGCAGGTTTGAATGGGCTTTTCCAGAAAAAAAAAGAGGAGCCTTCGGG
TCGCCGCCGACTGCGGTCGCAGACTTACTTACAAATGTTTTTTTTTTAGG
TTGAGATTTACGCTGCTATGTTACACGATGCTGCTCTGCTTTACGCGCAT
GCGCTGAACAAAACATTGAATATGAATGGATCAATTTTGGATGGCCGTCT
CATTATTAACAATACGTTAAATTATACTTTCGAAGGTGTGTTGTGTCTGA
TATTCCAAGTCATTTTTTTCAGTACTAGATTAGATGTCTACATTAATCAC
AAAAAAGTTCGGACTATTTCATTTTCGGACAAAATCTCCAAAAAACGTCC
GAACATTTGCACCCGAAAATTAAATGTCCGAAATAAAATGGTCCGAACTT
TTTTGTAATTAAATGTATTACAAAAATCAGGTACATTTCGGATGGACGAA
TAAATCTTTCGAAAAGATATTTCAGCTTTTCTAGCAATTATATTGGAGTA
AATGAATTTTTCATGTATCTTTAGCAATGTCGAGACACGCACTATTGACT
TCCAAGCCCGAAGAGCTAGACTCGAGACTCCTGGATGAGAAATGAAGCCA
CTTATTTCCCAACTAAAACGCCCGCGCGTGGTTTTTACACAAACGTCAGA
TTGAAAGTAAATTCTTTCGCTAGATTTAAAAATTGCAGTCCTCAAACACA
AAGGAACCACTAGATACAATCCGTCGTCATGATTGGCGGCGCATTTTAGG
CGCGTCCTAAATGGGAATAAGTGATTTCACTTTTTCTTGCCTGGGAAAGG
TAGGAGATTCTACTCTAGCCCTTCGGGCTTTAAACTCAATGGTCAGAACT
AATTATTGTATTGCTGAAGTACCCAAAGATTAAAGTCTACTTCTGGGTGA
TCTTAGGTAGGGATTCACAAGGAAATTACACTTGATAATTATGGGTAATC
AGAAGGTCCTAGCACAAATAATGGAGGAAACATCCTCCACCCTGCCCAAT
GATGGGAGAAGAATCACTCGAAACGTAGGCAAACGTAAACGCACGATCCA
CGATAAACTTTCAATATGAAAATCACTGGTTCGGTAAACTTAATTTTAGA
ACACGTGGATGGATCTACCCAATCTTGCGTACCCAGAGCCACTTATATCA
CTCACTTGATCTTATTGATGACTGTAATACAATCACCTTTTATGAGCGCC
ATCAGAATCATAAAAAAGGCAAACTAAGGGACTGGGTTTGAGCTTGATAA
AAACGTATTAGTTAAGGCCGGATGAATCCAACATTCAATCCAACATGTCC
AATTCATTGTTGGAAAAAATGTTGGACAAAAAGNGTACTAGATTAGATGT
CTACATTAATCACAAAAAAGTTCGGACTATTTCATTTTCGGACAAAATCT
CCAAAAAACGTCCGAACATTTGCACCCGAAAATTAAATGTCCGAAATAAA
ATGGTCCGAACTTTTTTGTAATTAAATGTATTACAAAAATCAGGTACATT
TCGGCTGGACGAATAAATCTTTCGAAAAGATATTTCAGCTTTTCTAGCAA
TTATATTGGAGTAAATGGATTTTTCATGTATCTTTAGCAATGTCGAGACA
CGCACTATTGACTTCCAAGCCCGAAGAGCTAGACTCGAGACTCCTGGATG
AGAAATGAAGCCACTTATTTCCCAACTAAAACGCCCGCGCGTGGTTTTTA
CACAAACGTCAGATTGAAAGTAAATTCTTTCGCTAGATTTAAAAATTGCA
GTCCTCAAACACAAAGGAACCACTAGATACAATCCGTCGTCATGATTGGC
GGCGCATTTTAGGCGCGTCCTAAATGGGAATAAGTGATTTCACTTTTTCT
TGCCTGGGAAAGGTAGGAGATTCTACTCTAGCCCTTCGGGCTTTAAACTC
AATGGTCAGAACTAATTATTGTATTGCTGAAGTACCCAAAGATTAAAGTC
TACTTCTGGGTGATCTTAGGTAGGAATTCACAAGGAAATTTACACTTGAT
AATTATGGGTAATCAGAAGGTTCTAGTACAAATAATGGAGGAAACATCCT
CCACCCTGCCCAATGATGGGAGAAGAATCACTCGAAACGTAGGCAAACGT
AAACGCATGATCCACGATAAACTTTCAATATGAAAATCACTGGTTCGGTA
AACTTAATTTAGAACACGTGGATGGATCTACCCAATCTTGCGTACCCAGA
GCCACTTATATCACTCACTTGATCTTACTGATGGCCGTAATACAATTACC
TTTTATGAGCGCCATCTGAATCATAAAAAAAGCAAACTAAGGGACTGGGT
TTGAGCTTGATAAAAACGTATTAGTTAAGGCCGGATGAATCCAACATTCA
ATCCAACATGTCCAATTCATTGTTGGAAAAAATGTTGGACAAAAAGTCAC
GTGAAAAAATTCGAAACGTTGTATGAAAAGTCATTTGCACAAAAACGAAT
GGTTACGCAAATGCATCCAACATTGAAAGNAATCCAACATTCAATCCAAC
ATGTCCAATTCATTGTTGGAAAAAATGTTGGACAAAAAGTCACGTGGAAA
AATTCGAAAAGTTGTATGAAAAGTCTTTTGCACAAAAACGAATGATTACG
CAAATGCATCCAACATTGAAACCAAAATAAAAGTGACGTCAATCTCATAA
AAAATGTTGGATTGATTTCCAACAATTTTCTTAAAAAGTTGCAATTTTAT
GATTTGCGCAAACGAACCCAACATTTGATCCAACAATAATGTTTGAAATC
ATTTGCGCCGGCCTTTAAACAACCCATAATGTTGGGTTCATTTGTAAAAA
TGTTGGACATCATGTTGGATGAAGTTTGATCGCCGTCAAACATTTCATCC
AACACTTTTATGAAATTGACGTCACTTTTATGTTGGTTTCAATGTTGGAT
GCGTTTGTGTATTCATATTGGATGAAAATATTTGACGTTTTTGCGCAAAT
AACTTTTCATACAACTTTCCGAATTTTTCCACGTGACTTTCCGTCCAACA
TTTCGTCCAACAATGTATTTGAAATGTTGAATCAATTGGATTCATTTGCG
CCGGCCTTAACAATTCATTTTTTGTTTGGAGCAAGTACTTTGAGTAACCC
CAGTTCCCATTTGTTTAGGGTATTTTTCGGAACTCCAAAACTCGAGGATA
ACGGTTTTAAGCAGTCCAAAAGTTTCTGGAGATGAAATTAGCGCCTTGGA
CATTAAAATGGTGATACCGGATTCTCCAGGGGCATTGTTTTTTAGTGATT
GAGTTGCTTTGGTTATTTCGTTGTCGGTTGGAGGATAATCAAGACCTTCG
AAGGATAATCAAGATTTTCTTTTAATTCTCTATCAGGAGCATCGGGTACA
GTTGTCATTGATCACGTTGGTGATCGTGCATCGGCTCTCGTCGTAAAGAA
CGTACATAACGGTCGGTACCAACGAACAGCCAATTTCTTCGTTACCGAGA
AACGACTTCAAGTTCTCAACAATACAGTTGTATGGCCTGGTAAAACAACT
GCTATCCCACTTGGGAGACCAGAATGCGATTTTGATAACCGGTTATGCCC
ACCCACTGGTACGTTGATAAGTTTTAATAAAAGTCAATTGCTACGATGAT
AATACTGTAATCTTATTTGACTACAAAATTTTCCAACCAATTCCTTTTCT
TTATTAGCCAACGTTTTCGGGTATGTGTCAGAAAATATTGCTTACTCATC
TATTTTAATTCACAAGCTTTTGGAATACCTTATCGGGGAAAGAATGTCGG
AGTTTTATTCCGTCGGGGTTTTTTTTTTTCGTCGGGGAAAAATTTCGTCA
CCTAGAGGCATTTTCGTCACTTCCCCCCGACCAAAATTTCAAATTTGTCA
CTTTTCCCCGACCAAATTTTTGGGCGGGGAAAAATTTTTTCACCTAGAGG
CATTTTCGTCACTTCCCCCCGACCAAAATTTCAAATTTGTCACTTTTCCC
CGACCAAATTTTTGGGCGGGGAAAAAATGTTTTTTTAAAGACTTGACTGA
AACCCAATACCAATGATGACGGTCCACTTTCATTTTATTTTAGAGCCCTC
GGTTTACGCTGTACTTACTTTCATTATCCTCTTGCTCCCATCATCTAATG
CCGCTTACATTTTATTTCAGAGCCCTGGGTTTACGTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00006150-exon-sc0000063-1575043694:223304..224199 | TCONS_00006150-exon-sc0000063-1575043694:223304..224199 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1575043694:221788..222071 | TCONS_00006150-exon-sc0000063-1575043694:221788..222071 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1575043694:221115..221250 | TCONS_00006150-exon-sc0000063-1575043694:221115..221250 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1575043694:217792..218013 | TCONS_00006150-exon-sc0000063-1575043694:217792..218013 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1575043694:217209..217229 | TCONS_00006150-exon-sc0000063-1575043694:217209..217229 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1510915933:223304..224199 | TCONS_00006150-exon-sc0000063-1510915933:223304..224199 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1510915933:221788..222071 | TCONS_00006150-exon-sc0000063-1510915933:221788..222071 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1510915933:221115..221250 | TCONS_00006150-exon-sc0000063-1510915933:221115..221250 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1510915933:217792..218013 | TCONS_00006150-exon-sc0000063-1510915933:217792..218013 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1510915933:217209..217229 | TCONS_00006150-exon-sc0000063-1510915933:217209..217229 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1491911889:223304..224199 | TCONS_00006150-exon-sc0000063-1491911889:223304..224199 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1491911889:221788..222071 | TCONS_00006150-exon-sc0000063-1491911889:221788..222071 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1491911889:221115..221250 | TCONS_00006150-exon-sc0000063-1491911889:221115..221250 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1491911889:217792..218013 | TCONS_00006150-exon-sc0000063-1491911889:217792..218013 | Clytia hemisphaerica | exon |
| TCONS_00006150-exon-sc0000063-1491911889:217209..217229 | TCONS_00006150-exon-sc0000063-1491911889:217209..217229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000063 | supercontig | sc0000063:217209..224199 - |
Blast
BLAST of TCONS_00006150 vs. Swiss-Prot (Human)
Match: GABR1 (Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens GN=GABBR1 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.183e-23 Identity = 97/400 (24.25%), Postives = 175/400 (43.75%), Query Frame = 2
Query: 296 IRLGVAIPWSGKNWDAGPRFASGISIAVEKINADPTLLPGYNISFIWKDSQCDEKRTLGVIADMLKDDQFPVNALIGPACSDGCRSGSYLADNWNVPMISYGCAASFFSVPQKFPNFARTVGVYSKSGHIFVNLMKTYKWTRIAILTPSSGIWSSIMNGVRNDIEAEDGLQVPFFQNFNKD-SVSDSFLKRQLEDAKEQAHIFLLGGYKATILKVMKQ---AKKIGLLRPGYAFISYELLIDKCVLPNKTEAEDCELLEGML--DISLFVPQNE------AYQKFANLVRKKMAEEPFNRFMAPEEPVEIXXXXXXXXXXXXXXXXN-------KTLNMNGSILDGRLIINNTLNYTFEGASGTVVIDHVGDRASALVVKNVHNGRYQRTANFFVTEKRL 1438
+ +G P SG W G + +A+E +N+ +LP Y + I DS+CD + + ++L +D P+ ++ P CS + A WN+ ++SYG ++ S Q+FP F RT + V L + + W +IA + ++ +++S ++ + ++ E G+++ F Q+F D +V LKRQ DA+ +F + +V K+ KK G+ ++ + D + N T E E +EG + +I + P N Q+F + K++ P E P+ A AL + N N + + I + +FEG SG VV D G R + +++ + G Y++ + T+ L
Sbjct: 170 VYIGALFPMSG-GWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYND--PIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVK-EAGIEITFRQSFFSDPAVPVKNLKRQ--DARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIYDPSI--NCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSGGGGRSGVRLEDFNYNNQTITDQ-IYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKKIGYYDSTKDDL 560
The following BLAST results are available for this feature:
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