TCONS_00006096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006096
Unique NameTCONS_00006096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006096 ID=TCONS_00006096|Name=TCONS_00006096|organism=Clytia hemisphaerica|type=transcript|length=732bp
gactGAACACATTCCAAGATATATTTTTGTAATATCAGCTATAAGTATTT
TGTGGCTGGTTGCATGAAAATAGAGAGAAAAATGCGCTCACAAATACACA
AAAGGACATGCATGATAATACAAGAAAGATTACTACAAAAATTTAATTAT
GGTCGCTACAGATAGACTGATCCCACATTATACTTAACAATTATTTGTTC
TGAAATCCCTTATCGAAAAATGACGTGATTTATGTTGAATGACGTCACTA
TCGTTCCACTTTCCTCTTAAAGCCATCTCGAGCTGTTTTATTAGGAGGTC
AAATCAAACATAAAAGAAATTCCATATGGTTTAAGCTTATTAAATATGAG
AAATACGTTTTGAGCTTGAGGTATTATTAGCTTAGTAGGGCTGATTTTTA
TCTGGGCTTGGGGTGCCAAGATTCAGTCTCATTGTGCCCTTTGTTCTAAA
GCAGTTGGCGGTTATAATAATACAGTTGCTCAAGCTTTCGGGAATACCGA
TTGCCTATAAATcttaaaaagtccaaaaatacaTGGGAAAAGTATTTGat
gattgcaaaaaaaaactgattattttcagggaggtttttgtttcaaaaag
ttaGAATGTAAAGCCTATCCTATCCAACTCCCAAAAGGAACCTCCCTCCT
TAGGTCATTTTTGTGTAAATTGGAAACAAACCCACTAAATTATGTCCTTT
AAAAAGAGTAAAGCATCATTAAATTTCCGATA
Run BLAST on NCBI

transcript from alignment at sc0000062:213955..214686

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006096 ID=TCONS_00006096|Name=TCONS_00006096|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0000062:213955..214686 (Clytia hemisphaerica)
TATCGGAAATTTAATGATGCTTTACTCTTTTTAAAGGACATAATTTAGTG
GGTTTGTTTCCAATTTACACAAAAATGACCTAAGGAGGGAGGTTCCTTTT
GGGAGTTGGATAGGATAGGCTTTACATTCtaactttttgaaacaaaaacc
tccctgaaaataatcagtttttttttgcaatcatCAAATACTTTTCCCAt
gtatttttggactttttaagATTTATAGGCAATCGGTATTCCCGAAAGCT
TGAGCAACTGTATTATTATAACCGCCAACTGCTTTAGAACAAAGGGCACA
ATGAGACTGAATCTTGGCACCCCAAGCCCAGATAAAAATCAGCCCTACTA
AGCTAATAATACCTCAAGCTCAAAACGTATTTCTCATATTTAATAAGCTT
AAACCATATGGAATTTCTTTTATGTTTGATTTGACCTCCTAATAAAACAG
CTCGAGATGGCTTTAAGAGGAAAGTGGAACGATAGTGACGTCATTCAACA
TAAATCACGTCATTTTTCGATAAGGGATTTCAGAACAAATAATTGTTAAG
TATAATGTGGGATCAGTCTATCTGTAGCGACCATAATTAAATTTTTGTAG
TAATCTTTCTTGTATTATCATGCATGTCCTTTTGTGTATTTGTGAGCGCA
TTTTTCTCTCTATTTTCATGCAACCAGCCACAAAATACTTATAGCTGATA
TTACAAAAATATATCTTGGAATGTGTTCagtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003471XLOC_003471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006096-exon-sc0000062-1491911889:213955..214686TCONS_00006096-exon-sc0000062-1491911889:213955..214686Clytia hemisphaericaexon
TCONS_00006096-exon-sc0000062-1510915933:213955..214686TCONS_00006096-exon-sc0000062-1510915933:213955..214686Clytia hemisphaericaexon
TCONS_00006096-exon-sc0000062-1575043694:213955..214686TCONS_00006096-exon-sc0000062-1575043694:213955..214686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:213955..214686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.230419	0	2.56142	1.30119	1.22098	0.816475	0.228653	0.495642	0.549808	0.316244	0.27069	0.0937047	0.038519	0.0413368	0.203694	0.260975	0	0.150916	0.131174	0.0959728	0.0777784	0.0707118	0.436989	0.650004	0.0930153	0.0992685	0.0752916	0.0767103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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