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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006077 ID=TCONS_00006077|Name=TCONS_00006077|organism=Clytia hemisphaerica|type=transcript|length=1290bp
CTCAaactgaccaatcttgctccacatatgtcaattcaatgtgaaaaagc
ttgtgaatcaaaattgatgagtaagcaaacgatatcactcttcttattta
aaaacaaaaccttttaaatGTATCAGTTTGGATGACAAACAAATTTAGGA
TTCCTTAAGCCGAGTTTCCACGAAGATAAAAGAAACATACGTAAAAAATA
TGACCTCTCGCTTACCAGACCTTCATGTTGAACGCGCTCTTGTATTTGTA
cgtgtaaaaaataaaatatgggCAATACAGTTTCTTTACTAGTAAATCAG
TTTGGACATATTTGTTatgttgacgaaaagatgtatcaaatacacgtatt
ttttttaagaaactagttttaccaagtaGTCTCattgtttcttaagaaat
cggccttttgagccttaaatgtttcttacatgtttctagatgtttcttag
tttttaggcattctgagcatcatgtttcttaaaagtgcgtctcttaaaaa
aacaaaaaaaacgtgtacacaatACCCCTCAAAGTATGACCCAAAAATAC
TCAGCAAGTGTCTTTTCTAAAGTCATTTGTGATAAAATAAAGAAGTCAAC
TCACAAAAGACACACAAGTGTTCAAACCATTGAGTTTagagcccgaaggg
ctagagttcaatctctaacctttctcaggcaagaaaagtgaagccttaag
attgaatctagcaattcctttgtttacgattgatattttttttcgaaatt
tagcggtaaatcttagtttcaatctgtcagttgtgtaaaaaccaggccag
ccgctcaaggccgcgcaactttggtaggatttgttggcttcaaatcctac
caaggaaattgacttctagcccttcgggcttatacttcattggttcaaac
GCATAAAATATTCCTAAAAGCTTAATTACTATAGTAGTAAACCATCCAGA
TCATTATTTGCTAAGTTTGATTGGTTTTGTTGAGTTTGTGACGTGTTCAT
AGGCTGAAGCATTCCCCCAGAATTCATTGGTTGTAATATCCCAGAATTCA
TTGCATTATTTCGGTTACCATTCATTTGATTCATCCCCATTCCCATTCCA
CCTTGAGAAGGTaacatttgatttgattggttttGAAACATACTATTATT
TTGATTCGACTGGTTTTGAAACATACTATTCGGTTGGTTGGACTGATTTT
GAAACATACTATTCGGTTGATTTGCCTGGTTTTGGAACATGTTACTTTGT
TGATTTgaattcaaattgaattgatgTGATGAAAAATTCG Run BLAST on NCBI transcript from alignment at sc0000062:606212..607534- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006077 ID=TCONS_00006077|Name=TCONS_00006077|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at sc0000062:606212..607534- (Clytia hemisphaerica)
CTCAAACTGACCAATCTTGCTCCACATATGTCAATTCAATGTGAAAAAGC
TTGTGAATCAAAATTGATGAGTAAGCAAACGATATCACTCTTCTTATTTA
AAAACAAAACCTTTTAAATGTATCAGTTTGGATGACAAACAAATTTAGGA
TTCCTTAAGCCGAGTTTCCACGAAGATAAAAGAAACATACGTAAAAAATA
TGACCTCTCGCTTACCAGACCTTCATGTTGAACGCGCTCTTGTATTTGTA
CGTGTAAAAAATAAAATATGGGCAATACAGTTTCTTTACTAGTAAATCAG
TTTGGACATATTTGTTATGTTGACGAAAAGATGTATCAAATACACGTATT
TTTTTTAAGAAACTAGTTTTACCAAGTAGTCTCATTGTTTCTTAAGAAAT
CGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAGATGTTTCTTAG
TTTTTAGGCATTCTGAGCATCATGTTTCTTAAAAGTGCGTCTCTTAAAAA
AACAAAAAAAACGTGTACACAATACCCCTCAAAGTATGACCCAAAAATAC
TCAGCAAGTGTCTTTTCTAAAGTCATTTGTGATAAAATAAAGAAGTCAAC
TCACAAAAGACACACAAGTGTTCAAACCATTGAGTTTAGAGCCCGAAGGG
CTAGAGTTCAATCTCTAACCTTTCTCAGGCAAGAAAAGTGAAGCCTTAAG
ATTGAATCTAGCAATTCCTTTGTTTACGATTGATATTTTTTTTCGAAATT
TAGCGGTAAATCTTAGTTTCAATCTGTCAGTTGTGTAAAAACCAGGCCAG
CCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTTGGCTTCAAATCCTAC
CAAGGAAATTGACTTCTAGCCCTTCGGGCTTATACTTCATTGGTTCAAAC
GCATAAAATATTCCTAAAAGCTTAATTACTATAGTAGTAAACCATCCAGA
TCATTATTTGCTAAGTTTGATTGGTTTTGTTGAGTTTGTGACGTGTTCAT
AGGCTGAAGCATTCCCCCAGAATTCATTGGTTGTAATATCCCAGAATTCA
TTGCATTATTTCGGTTACCATTCATTTGATTCATCCCCATTCCCATTCCA
CCTTGAGAAGGTAACATTTGATTTGATTGGTTTTGAAACATACTATTATT
TTGATTCGACTGGTTTTGAAACATACTATTCGGTTGGTTGGACTGATTTT
GAAACATACTATTCGGTTGGTTGGACTGATTTTGAAACATACTATTCGGT
TGATTTGCCTGGTTTTGGAACATGTTACTTTGTTGATTTGAATTCAAATT
GAATTGATGTGATGAAAAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006077-exon-sc0000062-1575043694:606330..607534 | TCONS_00006077-exon-sc0000062-1575043694:606330..607534 | Clytia hemisphaerica | exon |
| TCONS_00006077-exon-sc0000062-1575043694:606212..606296 | TCONS_00006077-exon-sc0000062-1575043694:606212..606296 | Clytia hemisphaerica | exon |
| TCONS_00006077-exon-sc0000062-1510915933:606330..607534 | TCONS_00006077-exon-sc0000062-1510915933:606330..607534 | Clytia hemisphaerica | exon |
| TCONS_00006077-exon-sc0000062-1510915933:606212..606296 | TCONS_00006077-exon-sc0000062-1510915933:606212..606296 | Clytia hemisphaerica | exon |
| TCONS_00006077-exon-sc0000062-1491911889:606330..607534 | TCONS_00006077-exon-sc0000062-1491911889:606330..607534 | Clytia hemisphaerica | exon |
| TCONS_00006077-exon-sc0000062-1491911889:606212..606296 | TCONS_00006077-exon-sc0000062-1491911889:606212..606296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:606212..607534 - |
Blast
The following BLAST results are available for this feature:
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