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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005698 ID=TCONS_00005698|Name=TCONS_00005698|organism=Clytia hemisphaerica|type=transcript|length=1718bp
tagttttttcgtccatccgccaaattaaattccctctgaaaaaacttttt
tggccatccgccaaattaaattcccgccaaaatttcttcctttaaggtag
ccAGTACTGTAGCAGTACATGCAAATTATttgcaaaaatttataaaatgt
gTATATGTGATTTATATATAATGCATACTATCATAAAATTTTATCTTACa
atgtttataaaaaagtgttttcataaTTATGTAACTCAGTCCcagaaata
tttgattttaaagTAGATGTCTCAAATCATATACTTTTAAGATATAGACG
TTTCCATCATGTTGGATAAATAAAAACTCCAGtattaaaacaaaaacaca
attttgcATATTGATACAAGTGTGtgttaaaattttcttgctaGTTTTTT
GATGCTGAAGTCAACTGAAGTTTTTATAATTATTCAACTTGAAATTGTGA
AAAGTCTATCAAGCAGATATGATGAAATTATTCAAAGTTTCCAAAAAATA
AGGCAAATATTAttaaatcaaaaacattttacatCTACAATATTATCCAA
TGTCAGAGTTTGTTTCAGCTATAAATTACATGGTTAGTAATAacatgtca
atatattttttacaaatttttgtcTTGTCCATTGCTCTTCAATTTGTTGC
AGAAAATCAGGCCTAACGACTTTTCCTCTATCTCCAAAGAAATTATCTTT
AACCACTAATGCAGAAGGTTTAGATTGCTCAATTTGAATCTTTCGAAAAA
CAAGTCCTTCAACAAACCCATCATAAAACTGTGATTGTGAATTCAACAAC
TCCATAACctttgaaagaagaagaaaattatcttTAATGACATaatcatg
atttaaaaaaaaatcattcttgAACGGGATCCCCTCGTTGAGCCACTTAA
ACTATTGGGAAAAATTGAACCAACTGAAAATCTACAGTCTTGAAAGAAGA
AGAGACAGGTACAGAATCATTTACACGTGGTGCATACTAGAAGACATTGC
CCCCAATTTCAACTACAATGACGAGGCAGACANTAAAAACTCCAGtatta
aaacaaaaacacaattttgcATATTGATACAAGTGTGtgttaaaattttc
ttgctaGTTTTTTGATGCTGAAGTCAGctgtaaagtttttataattattC
AACTTGAAATTGTGAAAAGTCTATCAAGCAGATATGATGAAATTCTTCAA
AGTTTCCAAAAAATAAGGCAAATATTAttaaatcaaaaacattttacatC
TACAATATTATCCAATGTCAGAGTTTGTTTTAGCTATAAATTACATGGTT
AATAATAAGNACCAAGGCTCTTCAATGCTCTGCCAAAATCCCTTAGAAAC
CTCACAAACTGTaccaaacaaacttttaaacagCATCTTGACCAATTCCT
CATGCCTCAGTACACTGCCAGACGAACCGCTGCTTCCTAATTATTTCAAC
TTCAGGAGAGCTGACAGTACAACAGTAATGGTCAATCATCGGATTCAACA
AATTGGATGAGTACCATAAAGTACATAATCAATAACGAAGCATCACGAAG
TAagtataatagacctttttttaaagaggccaccctgttgaataattatg
tagtccagcagaaaagcaatgataaaaccatgcataattattacaatatg
catgatacagtacactatcattgtttttatggctggactacataattatt
caacaggacgtcctcttt Run BLAST on NCBI transcript from alignment at sc0000054:467557..469274 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005698 ID=TCONS_00005698|Name=TCONS_00005698|organism=Clytia hemisphaerica|type=transcript|length=1718bp|location=Sequence derived from alignment at sc0000054:467557..469274 (Clytia hemisphaerica)
aaagaggacgtcctgttgaataattatgtagtccagccataaaaacaatg
atagtgtactgtatcatgcatattgtaataattatgcatggttttatcat
tgcttttctgctggactacataattattcaacagggtggcctctttaaaa
aaaggtctattatactTACTTCGTGATGCTTCGTTATTGATTATGTACTT
TATGGTACTCATCCAATTTGTTGAATCCGATGATTGACCATTACTGTTGT
ACTGTCAGCTCTCCTGAAGTTGAAATAATTAGGAAGCAGCGGTTCGTCTG
GCAGTGTACTGAGGCATGAGGAATTGGTCAAGATGctgtttaaaagtttg
tttggtACAGTTTGTGAGGTTTCTAAGGGATTTTGGCAGAGCATTGAAGA
GCCTTGGTNCTTATTATTAACCATGTAATTTATAGCTAAAACAAACTCTG
ACATTGGATAATATTGTAGatgtaaaatgtttttgatttaaTAATATTTG
CCTTATTTTTTGGAAACTTTGAAGAATTTCATCATATCTGCTTGATAGAC
TTTTCACAATTTCAAGTTGaataattataaaaactttacagCTGACTTCA
GCATCAAAAAACtagcaagaaaattttaacaCACACTTGTATCAATATgc
aaaattgtgtttttgttttaataCTGGAGTTTTTANTGTCTGCCTCGTCA
TTGTAGTTGAAATTGGGGGCAATGTCTTCTAGTATGCACCACGTGTAAAT
GATTCTGTACCTGTCTCTTCTTCTTTCAAGACTGTAGATTTTCAGTTGGT
TCAATTTTTCCCAATAGTTTAAGTGGCTCAACGAGGGGATCCCGTTcaag
aatgatttttttttaaatcatgattATGTCATTAaagataattttcttct
tctttcaaagGTTATGGAGTTGTTGAATTCACAATCACAGTTTTATGATG
GGTTTGTTGAAGGACTTGTTTTTCGAAAGATTCAAATTGAGCAATCTAAA
CCTTCTGCATTAGTGGTTAAAGATAATTTCTTTGGAGATAGAGGAAAAGT
CGTTAGGCCTGATTTTCTGCAACAAATTGAAGAGCAATGGACAAgacaaa
aatttgtaaaaaatatattgacatgtTATTACTAACCATGTAATTTATAG
CTGAAACAAACTCTGACATTGGATAATATTGTAGatgtaaaatgtttttg
atttaaTAATATTTGCCTTATTTTTTGGAAACTTTGAATAATTTCATCAT
ATCTGCTTGATAGACTTTTCACAATTTCAAGTTGAATAATTATAAAAACT
TCAGTTGACTTCAGCATCAAAAAACtagcaagaaaattttaacaCACACT
TGTATCAATATgcaaaattgtgtttttgttttaataCTGGAGTTTTTATT
TATCCAACATGATGGAAACGTCTATATCTTAAAAGTATATGATTTGAGAC
ATCTActttaaaatcaaatatttctgGGACTGAGTTACATAAttatgaaa
acacttttttataaacattGTAAGATAAAATTTTATGATAGTATGCATTA
TATATAAATCACATATAcacattttataaatttttgcaaATAATTTGCAT
GTACTGCTACAGTACTggctaccttaaaggaagaaattttggcgggaatt
taatttggcggatggccaaaaaagttttttcagagggaatttaatttggc
ggatggacgaaaaaacta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005698-exon-sc0000054-1491911889:467557..469274 | TCONS_00005698-exon-sc0000054-1491911889:467557..469274 | Clytia hemisphaerica | exon |
| TCONS_00005698-exon-sc0000054-1510915933:467557..469274 | TCONS_00005698-exon-sc0000054-1510915933:467557..469274 | Clytia hemisphaerica | exon |
| TCONS_00005698-exon-sc0000054-1575043694:467557..469274 | TCONS_00005698-exon-sc0000054-1575043694:467557..469274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:467557..469274 . |
Blast
The following BLAST results are available for this feature:
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