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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005694 ID=TCONS_00005694|Name=TCONS_00005694|organism=Clytia hemisphaerica|type=transcript|length=1474bp
AAACGAAATTGAGTCGAGAAAAGAAAGTGATAAAAGGAAGAACTGAAGAA
GAAGCattaaaattggaaaattggtatGAGGAAAATCTCATTTGAGCAAA
AGTCATCGAACAGAATAGTTCAAAGTAAATTATCGTAGCCACCAATATAC
TCTTTAGAAGACTCTGAGCATTCTAAGCAGTCAAAACAGAAGGACGTAAT
TCACAATGAGTGAAACAATCATCGCTCTCTTCTCCGTTTCTCTCATCTTT
GGAGTGTTTGGAAACtctttgatcattttcatccacGGCTTCGCATCAAG
AGAAAGATATTTAAATTTCCAGCGATTGTTATTATTCCTGGCTGTGTCAG
ATCTACTTAAGACCATCAGCATGTCACCGTTCTATATATACTTGGAAATC
CACCAGGGAGAAAATGAATGGATGTACGGAATGAGTGGATGTAAAATGAT
CCCTTCTTTGTGGTGTGTGTTCAATTACGTGTCACTCGGCGTGCTCAGCG
TGATGGTGATAGAGAAAACGTGCACTCGAATGTGGACGGGATCTCACCTT
AGTTGGAAGCAAGTCACGCGAGGAGTGGGCGTGGTTTCCGTTCTGGCGAT
TGTGAGATGTGTACCAAGAATATACGATCTGTCCTTGGTGAATGGAGAAT
GTCAGCAACGGTTGACCGGTGGATACAGATGGTCCACCATCATTCTATCT
ATTTTGATGGAAGGCGCGTTCGCTATATTGTGCTTTGTGGCTGTCATATA
TCTAAAATGCCAAGGTTGGTCCAAGAGGAAACCAAAGCGTAGCCGTAAAA
GCGGTGGATCATTTGTGCATGGCGATGACTTGGCCAACTACAACCAAACT
AATCGAAATATCGTATTTGTGTACTGTCTCATTTTCATAATATCCACGTT
GCCTTACAGCTGTTATATATTCTATCAAAGTTTCGTGACGTCATCGGAAG
ATCACCAGAACGAGGCTATTGGATACAATATACAATCCAATGCTTTGATT
ACCAGGATCACTATACTGTTGAGTTCATTCAGCggttgtttgaatgtttt
gatcgcacTTTTTATGAAGTCTTTTCGTGAAGAAGTTGTGACTCACGTCA
CACCAATCCGTTGGCTGTGTAGTTTATGCAACGGTGGCCCTCCGTTATCA
AACACAATCATCATTCGAAGTATTGAGCACATTGATTGTCCATCCGGGCC
ACCAGTCGATCGACTGGCACCACAACGATCGCAAAGAAGAGCTGCTTTTG
ATGATGAACATCATTTTAGCTTATTGTATCAATAAACTTGAAACCataca
aaaaaatgaattttaaactCAATACTTAGTATGGGCTCATCGCACCCTGG
CAATGAAGGAAAGTGGGAAATAGAGGATTTCTCAAATTGATGTAAAGAAT
ATAAATCTCGAACAATTATTTGAAATTCTTGTTAAATCGGGGATCTTTCA
CATCTGGTTAAATAAATGAGTAGC Run BLAST on NCBI protein sequence of TCONS_00005694-protein >TCONS_00005694-protein ID=TCONS_00005694-protein|Name=TCONS_00005694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSETIIALFSVSLIFGVFGNSLIIFIHGFASRERYLNFQRLLLFLAVSDL
LKTISMSPFYIYLEIHQGENEWMYGMSGCKMIPSLWCVFNYVSLGVLSVM
VIEKTCTRMWTGSHLSWKQVTRGVGVVSVLAIVRCVPRIYDLSLVNGECQ
QRLTGGYRWSTIILSILMEGAFAILCFVAVIYLKCQGWSKRKPKRSRKSG
GSFVHGDDLANYNQTNRNIVFVYCLIFIISTLPYSCYIFYQSFVTSSEDH
QNEAIGYNIQSNALITRITILLSSFSGCLNVLIALFMKSFREEVVTHVTP
IRWLCSLCNGGPPLSNTIIIRSIEHIDCPSGPPVDRLAPQRSQRRAAFDD
EHHFSLLYQ Run BLAST on NCBI transcript from alignment at sc0000054:302020..303493 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005694 ID=TCONS_00005694|Name=TCONS_00005694|organism=Clytia hemisphaerica|type=transcript|length=1474bp|location=Sequence derived from alignment at sc0000054:302020..303493 (Clytia hemisphaerica)
GCTACTCATTTATTTAACCAGATGTGAAAGATCCCCGATTTAACAAGAAT
TTCAAATAATTGTTCGAGATTTATATTCTTTACATCAATTTGAGAAATCC
TCTATTTCCCACTTTCCTTCATTGCCAGGGTGCGATGAGCCCATACTAAG
TATTGagtttaaaattcatttttttgtatGGTTTCAAGTTTATTGATACA
ATAAGCTAAAATGATGTTCATCATCAAAAGCAGCTCTTCTTTGCGATCGT
TGTGGTGCCAGTCGATCGACTGGTGGCCCGGATGGACAATCAATGTGCTC
AATACTTCGAATGATGATTGTGTTTGATAACGGAGGGCCACCGTTGCATA
AACTACACAGCCAACGGATTGGTGTGACGTGAGTCACAACTTCTTCACGA
AAAGACTTCATAAAAAgtgcgatcaaaacattcaaacaaccGCTGAATGA
ACTCAACAGTATAGTGATCCTGGTAATCAAAGCATTGGATTGTATATTGT
ATCCAATAGCCTCGTTCTGGTGATCTTCCGATGACGTCACGAAACTTTGA
TAGAATATATAACAGCTGTAAGGCAACGTGGATATTATGAAAATGAGACA
GTACACAAATACGATATTTCGATTAGTTTGGTTGTAGTTGGCCAAGTCAT
CGCCATGCACAAATGATCCACCGCTTTTACGGCTACGCTTTGGTTTCCTC
TTGGACCAACCTTGGCATTTTAGATATATGACAGCCACAAAGCACAATAT
AGCGAACGCGCCTTCCATCAAAATAGATAGAATGATGGTGGACCATCTGT
ATCCACCGGTCAACCGTTGCTGACATTCTCCATTCACCAAGGACAGATCG
TATATTCTTGGTACACATCTCACAATCGCCAGAACGGAAACCACGCCCAC
TCCTCGCGTGACTTGCTTCCAACTAAGGTGAGATCCCGTCCACATTCGAG
TGCACGTTTTCTCTATCACCATCACGCTGAGCACGCCGAGTGACACGTAA
TTGAACACACACCACAAAGAAGGGATCATTTTACATCCACTCATTCCGTA
CATCCATTCATTTTCTCCCTGGTGGATTTCCAAGTATATATAGAACGGTG
ACATGCTGATGGTCTTAAGTAGATCTGACACAGCCAGGAATAATAACAAT
CGCTGGAAATTTAAATATCTTTCTCTTGATGCGAAGCCgtggatgaaaat
gatcaaagaGTTTCCAAACACTCCAAAGATGAGAGAAACGGAGAAGAGAG
CGATGATTGTTTCACTCATTGTGAATTACGTCCTTCTGTTTTGACTGCTT
AGAATGCTCAGAGTCTTCTAAAGAGTATATTGGTGGCTACGATAATTTAC
TTTGAACTATTCTGTTCGATGACTTTTGCTCAAATGAGATTTTCCTCata
ccaattttccaattttaatGCTTCTTCTTCAGTTCTTCCTTTTATCACTT
TCTTTTCTCGACTCAATTTCGTTT Coding sequence (CDS) from alignment at sc0000054:302020..303493 >TCONS_00005694 ID=TCONS_00005694|Name=TCONS_00005694|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000054:302020..303493 (Clytia hemisphaerica)
TTATTGATACAATAAGCTAAAATGATGTTCATCATCAAAAGCAGCTCTTC
TTTGCGATCGTTGTGGTGCCAGTCGATCGACTGGTGGCCCGGATGGACAA
TCAATGTGCTCAATACTTCGAATGATGATTGTGTTTGATAACGGAGGGCC
ACCGTTGCATAAACTACACAGCCAACGGATTGGTGTGACGTGAGTCACAA
CTTCTTCACGAAAAGACTTCATAAAAAgtgcgatcaaaacattcaaacaa
ccGCTGAATGAACTCAACAGTATAGTGATCCTGGTAATCAAAGCATTGGA
TTGTATATTGTATCCAATAGCCTCGTTCTGGTGATCTTCCGATGACGTCA
CGAAACTTTGATAGAATATATAACAGCTGTAAGGCAACGTGGATATTATG
AAAATGAGACAGTACACAAATACGATATTTCGATTAGTTTGGTTGTAGTT
GGCCAAGTCATCGCCATGCACAAATGATCCACCGCTTTTACGGCTACGCT
TTGGTTTCCTCTTGGACCAACCTTGGCATTTTAGATATATGACAGCCACA
AAGCACAATATAGCGAACGCGCCTTCCATCAAAATAGATAGAATGATGGT
GGACCATCTGTATCCACCGGTCAACCGTTGCTGACATTCTCCATTCACCA
AGGACAGATCGTATATTCTTGGTACACATCTCACAATCGCCAGAACGGAA
ACCACGCCCACTCCTCGCGTGACTTGCTTCCAACTAAGGTGAGATCCCGT
CCACATTCGAGTGCACGTTTTCTCTATCACCATCACGCTGAGCACGCCGA
GTGACACGTAATTGAACACACACCACAAAGAAGGGATCATTTTACATCCA
CTCATTCCGTACATCCATTCATTTTCTCCCTGGTGGATTTCCAAGTATAT
ATAGAACGGTGACATGCTGATGGTCTTAAGTAGATCTGACACAGCCAGGA
ATAATAACAATCGCTGGAAATTTAAATATCTTTCTCTTGATGCGAAGCCg
tggatgaaaatgatcaaagaGTTTCCAAACACTCCAAAGATGAGAGAAAC
GGAGAAGAGAGCGATGATTGTTTCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005694-exon-sc0000054-1491911889:302020..303493 | TCONS_00005694-exon-sc0000054-1491911889:302020..303493 | Clytia hemisphaerica | exon |
| TCONS_00005694-exon-sc0000054-1510915933:302020..303493 | TCONS_00005694-exon-sc0000054-1510915933:302020..303493 | Clytia hemisphaerica | exon |
| TCONS_00005694-exon-sc0000054-1575043694:302020..303493 | TCONS_00005694-exon-sc0000054-1575043694:302020..303493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:302020..303493 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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