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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005567 ID=TCONS_00005567|Name=TCONS_00005567|organism=Clytia hemisphaerica|type=transcript|length=7622bpRun BLAST on NCBI protein sequence of TCONS_00005567-protein >TCONS_00005567-protein ID=TCONS_00005567-protein|Name=TCONS_00005567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2037bp MMKSSSSKLKTLGSVENEQLPPSRPMSSNDVIVIREDSQHEKRVNLDQQIRun BLAST on NCBI transcript from alignment at sc0000054:328760..359871+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005567 ID=TCONS_00005567|Name=TCONS_00005567|organism=Clytia hemisphaerica|type=transcript|length=31112bp|location=Sequence derived from alignment at sc0000054:328760..359871+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:328760..359871+ >TCONS_00005567 ID=TCONS_00005567|Name=TCONS_00005567|organism=Clytia hemisphaerica|type=CDS|length=256788bp|location=Sequence derived from alignment at sc0000054:328760..359871+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005567 vs. Swiss-Prot (Human)
Match: DOC11 (Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1 SV=2) HSP 1 Score: 1323.53 bits (3424), Expect = 0.000e+0 Identity = 797/2083 (38.26%), Postives = 1189/2083 (57.08%), Query Frame = 3
Query: 225 LDQQIKDLVTG---------VHPIDYEKELEDRRTEIKRDRHNDLLLFPDDDISLFKRGRELKTEYSTVPPQAFKDASNLLVRECLNVYTCDHFVLERNYKKHTSHDWAQRNVQSIKILQKP--LYEVDVELDEIDGMQETMLAPTRENGIYKEGYLTKSPFHSDNNPVYGTKTYKRRWFTLKQTSNDGSYVL-EYRKEEGSAFAKGTLYLDSCTQIRKGVKGRMYGFELHIQDKI-YGLAADSSNEMDTWIKALCKGTGIEIE---QEKPLRSLFGK----GTHAKHKNLRESLKNSNHPLLQEYAKETDAGNAKMRQSNRLPIFGVYPELFSQTYGVLDTQDNTVEPFKDGKSTKFVFYAHSLKFKL--NNGDQ------NCEPFFLTVALYDVKNNMKISEDFCFDLNDDSMKE-IYSNPTKDENDVGGEKKKEKVY---------HCPKQCVFSVETAHQEIFLVLRINKVLQGGITACAEPYIKGSDNVKAAQKVSKQVQLAGKRLGKLRMPFGWCAKNVFKNEVGDLDLESGFGSIYKQESSRLTDDELLRMLQDLKNEYKINRTVIPGSFQSKLSPITSNFPNCYSPSLIPLKPFSRSEDVEASVEVQSFCPMKTEIAVPFNEYVNNFYIYPISLNYSSQKAL-KARNISCTIQFKDLDDLSAKPLKCLYQRNGVCTFTHQIVCPVLHHNTTPAFFEEIKILLPPQLEKKHHVLFTFHHVSVEQPKESKEKKKD-VMTPVGYSWMAVLDQHVIRGDENSLPVALYLPESYMYSDTVNEGLNGNMGGKTNGPDIKWADGKGQKIFKVNAKLISTIYSQDSHINNLFSHWALCGDGRPSADVEMSRLLKLMHAVDVELVIKFLPVVLNMLFHVLIQ-TNNEDVAVNVVSLLIRITSMMHTANKNHFLKSYVEYTFQME---SIKNKTVHEELAKNLIFYLRLGADPTMIANILQHSWFFFDVMVKSMAHSHMGRAKKNAFESRKGRFNNDYTKTLENLFKVFIDQLVNRAKEKATVVKEANVNLGKFIRDCLTHMDRGFVFEIVNYLKDQYNPPDTQMF-ELKFELLRCISEHEHFVPLNFPFDI------RKKGDVHESTLNDYYCKRHFLVGVLLREFSNALYQPKAIRKYALRVLRNLLAKHEFDERYIGNVEKQSRIAGLYIPYLTMMLEHSLRFHKNLDRPKIDDSLLSIHRIAP-----------TTPSHDGNMSPIL------------MKRXXXXXXXXXXXXXXIMSLTGSGK----------VPPILPFEDDEAREFLLCFSFLLKNLHSSIVVDWWREILTTPIKRPHVNAATFYYRQCEKHFAKFLAIIDFFDLLEQCVKRLKYNGSANLEKTNVTAESTKQFFENKYASLTRPSPRLSVGNSHRR-------QLXXXXXXXXXXXDYELEKKSLLEANLANEVAVTVLDMIELFITHFKFHLEQDDGDNVLMKKLFNVLMTFLRIGQSEEVMKYVFASLRSFMHKFSSVLFHGSANVCGVLCYEILRLCNSKIESVRTQACCFMYLLMRSNYEFSG-KGCARVHHQVIVAVSKLIA-AGMNRHSMLQ-SLIILKNYSVDDKGMKSTEFPAEVRDLIKKVHTVLLATAQMKEHEDDHEVLVDLQYSLAKSYSSTPELRQTWLQSMALIHEKHGDYSESAMCYIHSAALVAEYLKSRGEYPGGSSLFRNMSSNIVPDESLTVDDGGDNSELIYRTKNLIDLLEVSADRIRMSERYELMGEIYKIAIPLYELERNFPLLAIAYGTLKESYEKVVAVMETGKRMLGRYYRVAFYGR-VFKSNDGKEFIYKEPKLTSLPEISQRLNEKYDQKYG--NVKLIMDSAKVKPEELNPAVNYIQVTFVEPYFDEDELKQRVTAFERENNIRRFVFETPFTLSGKARGSLSEQHKRKTILTTSHSFPYVKKRILVVQQEQYELSPIEVAIDEMQNKVIDLNQVINLDPPDMKKLQLRLAGSVSVQVNAGPMAYAETFLDNEVVKNYMSKHVEALQQTYRDFVKVCGNAINVNEILIQKDQTAYHEDLKERYEVLKTKIADYVGPETMEDSFLLLP 6182
L Q + + V G V P+DYE + R+T+I D DLL+FP +DIS+ GR+ +T STVP A K A +L V+EC+ Y+ D V+ Y+ S D+ +S++ + P ++E+D ++ + +++ +++ G+ K+G+L K+ +S K +KRR+F L Q DGSY+L Y+ E+ S +KG +YLD+C + + K R + FEL + DK + LAA++ EM+ W+ L K I + QEK + + K +N+ SL+ S HP L +Y +ET+ N R R +F E+ + ++ ++PF++ + +F+ H L F + GD N EPFF+ +AL+DVKNN KIS DF DLN S++E ++ + T+ +D + + Y +Q +FSV H EIFLV RI KVLQG IT CAEPYIK SD VK AQKV + + RLG+ RMPF W A+ +FK+ G LDL+ F +YKQ+SS+L+ +++L++L + K K +IPG + + + NC + S +PLKPF ++ +VEV+ F P T+ PF Y N+ Y+YP+ L Y SQK KARNI+ ++F+D D+ A LKC+Y + FT V HHN P F++EIKI LP L +KHH+LFTF+HVS E + KK+D V TPVG++W+ +L I E LPV+ LP Y+ LN + DIKW DG + + K+ + L STIY+QD H++ F H L G E+ + LK +HA++++++I+FLPV+L LF VL T+ +DV +N +L+ I S H + +L+S+++Y+F+ E + + + +HE LA +I L+ AD I +L++SWFFF+++ KSMA + K R RF Y L +L I + R E + N +L F++ CLT MDRGF+F ++N ++P D ++ E KFE L+ I HEH++PLN P R + E +L+D YCK HFLVG+LLRE S AL IR A+ V++NLL KH FD RY + +Q++IA LY+P++ ++LE N+ R D+L S + T+P++ G++S +KR + + + +G+ V + E R L+C+ +++K + ++ +W ++ +P + +I+ LLE C+ +Y G N+ + + A +K F ++ S T P+ R G R + S + + ++ ++ ++LLE N A EV++TVLD I F FK L +DG N LMKK+F++ + FL+ GQSE +K+VFASLR+F+ KF S F G N+C CYE+L+ C SKI S R +A +YLLMR+N+E++ K R H Q+I+AVS+LIA ++ S Q SL I+ N++ D+ MK+T FPAEV+DL K++ TVL+ATAQMKEHE D E+L+DLQYSLAKSY+STPELR+TWL SMA IH K+GD+SE+AMCY+H AALVAE+L + +P G S F+ ++ NI DE + + ++ Y + L++LLE D + +ERYE++ EI K+ +P+YE R F L Y TL +Y K++ VM T KR+LG ++RVAFYG+ F+ DGKE+IYKEPKLT L EIS RL + Y +K+G NVK+I DS KV +EL+P +IQVT+V+PYFD+ EL +R T FER +NI RFVFE P+TLSGK +G + EQ KR+TILTTS+SFPYVKKRI + ++Q L PI+VA DE+++K +L ++ + DM +LQL+L G VSVQVNAGP+AYA FL++ Y K V L+ +R F++ C A+ +NE LI++DQ YHE LK + + +++D + + +++ + P
Sbjct: 20 LRQSVSEAVRGSVVLEKAKVVEPLDYENVIAQRKTQIYSDPLRDLLMFPMEDISISVIGRQRRTVQSTVPEDAEKRAQSLFVKECIKTYSTDWHVVNYKYEDF-SGDFRMLPCKSLRPEKIPNHVFEID---EDCEKDEDSSSLCSQKGGVIKQGWLHKANVNS--TITVTMKVFKRRYFYLTQLP-DGSYILNSYKDEKNSKESKGCIYLDACIDVVQCPKMRRHAFELKMLDKYSHYLAAETEQEMEEWLITLKKIIQINTDSLVQEKKETVETAQDDETSSQGKAENIMASLERSMHPELMKYGRETEQLNKLSRGDGRQNLFSFDSEVQRLDFSGIEPD---IKPFEEKCNKRFLVNCHDLTFNILGQIGDNAKGPPTNVEPFFINLALFDVKNNCKISADFHVDLNPPSVREMLWGSSTQLASDGSPKGSSPESYIHGIAESQLRYIQQGIFSVTNPHPEIFLVARIEKVLQGNITHCAEPYIKNSDPVKTAQKVHRTAKQVCSRLGQYRMPFAWAARPIFKDTQGSLDLDGRFSPLYKQDSSKLSSEDILKLLSEYKKPEKTKLQIIPGQLNITVECVPVDLSNCITSSYVPLKPFEKNCQ-NITVEVEEFVPEMTKYCYPFTIYKNHLYVYPLQLKYDSQKTFAKARNIAVCVEFRDSDESDASALKCIYGKPAGSVFTTNAYAVVSHHNQNPEFYDEIKIELPIHLHQKHHLLFTFYHVSCEINTKGTTKKQDTVETPVGFAWVPLLKDGRIITFEQQLPVSANLPPGYL-------NLNDAESRRQCNVDIKWVDG-AKPLLKIKSHLESTIYTQDLHVHKFFHHCQLIQSGSKEVPGELIKYLKCLHAMEIQVMIQFLPVILMQLFRVLTNMTHEDDVPINCTMVLLHIVSKCHEEGLDSYLRSFIKYSFRPEKPSAPQAQLIHETLATTMIAILKQSADFLSINKLLKYSWFFFEIIAKSMATYLLEENKIKL--PRGQRFPETYHHVLHSLLLAIIPHVTIRYAEIPDESRNVNYSLASFLKRCLTLMDRGFIFNLINDYISGFSPKDPKVLAEYKFEFLQTICNHEHYIPLNLPMAFAKPKLQRVQDSNLEYSLSDEYCKHHFLVGLLLRETSIALQDNYEIRYTAISVIKNLLIKHAFDTRY-QHKNQQAKIAQLYLPFVGLLLE-------NIQRLAGRDTLYSCAAMPNSASRDEFPCGFTSPANRGSLSTDKDTAYGSFQNGHGIKREDSRGSLIPEGATGFPDQGNTGENTRQSSTRSSVSQYNRLDQYEIRSLLMCYLYIVKMISEDTLLTYWNKV--SPQE-----------------------LINILILLEVCLFHFRYMGKRNIARVH-DAWLSKHFGIDR-KSQTMPALRNRSGVMQARLQHLSSLESSFTLNHSSTTTEADIFHQALLEGNTATEVSLTVLDTISFFTQCFKTQLLNNDGHNPLMKKVFDIHLAFLKNGQSEVSLKHVFASLRAFISKFPSAFFKGRVNMCAAFCYEVLKCCTSKISSTRNEASALLYLLMRNNFEYTKRKTFLRTHLQIIIAVSQLIADVALSGGSRFQESLFIINNFANSDRPMKATAFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLIDLQYSLAKSYASTPELRKTWLDSMAKIHVKNGDFSEAAMCYVHVAALVAEFLHRKKLFPNGCSAFKKITPNI--DEEGAMKEDAGMMDVHYSEEVLLELLEQCVDGLWKAERYEIISEISKLIVPIYEKRREFEKLTQVYRTLHGAYTKILEVMHTKKRLLGTFFRVAFYGQSFFEEEDGKEYIYKEPKLTGLSEISLRLVKLYGEKFGTENVKIIQDSDKVNAKELDPKYAHIQVTYVKPYFDDKELTERKTEFERNHNISRFVFEAPYTLSGKKQGCIEEQCKRRTILTTSNSFPYVKKRIPINCEQQINLKPIDVATDEIKDKTAELQKLCSSTDVDMIQLQLKLQGCVSVQVNAGPLAYARAFLNDSQASKYPPKKVSELKDMFRKFIQACSIALELNERLIKEDQVEYHEGLKSNFRDMVKELSDIIHEQILQEDTMHSP 2044 The following BLAST results are available for this feature:
BLAST of TCONS_00005567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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