TCONS_00005508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005508
Unique NameTCONS_00005508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005508 ID=TCONS_00005508|Name=TCONS_00005508|organism=Clytia hemisphaerica|type=transcript|length=1216bp
TGTGGGGCAACACTTACAGCCAgagagatgatttttttcttcctaatttt
tttattagaaatcatGAGAAGGATCGAAAAAGTATTTTTCCAGCCGCCTG
CATGACTTTCTTTTTCGTCACCTGGTGGATCGGAAACGAAAAAATTTTTA
AGGTCGGTCTTATATCAAGGCAAATTTGCATATCTACtcatttttgctga
attttccGGCAGGGCGAGGGTCCCCCCTGGGTGTCATAATGGATATAGGC
ATCCACAATACCCATTACTCataagaaatataaacaaacttaaaaaatta
caaagtttttataaaatttataagaagaaagaatAGAACAAAACCTTAGA
TAAGATAATATTATAACAAAGATTTCTTCAACATATGTGGTTTTAGCTAT
GCTTGTCCTGGAATTTTTGGAACCCATTGAGTACATCTTCAATTgtcaaa
cctttttcaacatgaACACAGGTCACACCAAGTGAATTGATATCATAAAT
GTTTCCAGGATtatcatcaaaaaacaacatATCTTTATAATGTACAGCAC
TTTGTTTACTAAGTTCATCAAAATGGAATTTTTTACAACGTGGTGCCATA
ACATCATAAGTGAAAAAATCTCGAATTTCAAGAGCATGCAAAACTTCCTT
GGCAAAATTACCAACTGGCGTTTTTGATGCTATACCAAGTGTGAACCCAT
GATTGTGGAGGTTATGGATTAAATCATAAGCTCCTTGATACAATGATACA
ATTTTACCATCATTCCCGGTCACTCTACCAGTTTTGTCACATTTTTTAAT
TGGTTTTTCAACATGTGATATGCACCAAAATGGCCAAAGGGTTTCATCCA
AATCAAAGACAACCATTTCAGGCAAtttctttccatttttcaatattttt
gagaGTTTATCCATCTTTTTTATTTGCTATAATTTAACAATCCAGTAAAA
GGCTTTGAGAATTTGTGGGCAGTTTTGCAGTGGTGAGATTTCATATGCAA
AACCTATATGCAAAGAGATACTAATATAAAACTAACATAAATAATTGGCA
CTAAATATTAAAGTGTattcttgtagaagaaagattaagtTTGCTTCTCT
CGAAAACCAGAAATAATTATAACCTCTCGTCTCTTAGAACCAGCCCTTCA
AACAGGGATCGAATTAGGGTATCGCATTTTGCAAATCGCGATTCGCCATT
CGTTTTTAATTACTTT
Run BLAST on NCBI

protein sequence of TCONS_00005508-protein

>TCONS_00005508-protein ID=TCONS_00005508-protein|Name=TCONS_00005508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MDKLSKILKNGKKLPEMVVFDLDETLWPFWCISHVEKPIKKCDKTGRVTG
NDGKIVSLYQGAYDLIHNLHNHGFTLGIASKTPVGNFAKEVLHALEIRDF
FTYDVMAPRCKKFHFDELSKQSAVHYKDMLFFDDNPGNIYDINSLGVTCV
HVEKGLTIEDVLNGFQKFQDKHS
Run BLAST on NCBI

transcript from alignment at sc0000053:82831..84046

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005508 ID=TCONS_00005508|Name=TCONS_00005508|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at sc0000053:82831..84046 (Clytia hemisphaerica)
AAAGTAATTAAAAACGAATGGCGAATCGCGATTTGCAAAATGCGATACCC
TAATTCGATCCCTGTTTGAAGGGCTGGTTCTAAGAGACGAGAGGTTATAA
TTATTTCTGGTTTTCGAGAGAAGCAAacttaatctttcttctacaagaat
ACACTTTAATATTTAGTGCCAATTATTTATGTTAGTTTTATATTAGTATC
TCTTTGCATATAGGTTTTGCATATGAAATCTCACCACTGCAAAACTGCCC
ACAAATTCTCAAAGCCTTTTACTGGATTGTTAAATTATAGCAAATAAAAA
AGATGGATAAACtctcaaaaatattgaaaaatggaaagaaaTTGCCTGAA
ATGGTTGTCTTTGATTTGGATGAAACCCTTTGGCCATTTTGGTGCATATC
ACATGTTGAAAAACCAATTAAAAAATGTGACAAAACTGGTAGAGTGACCG
GGAATGATGGTAAAATTGTATCATTGTATCAAGGAGCTTATGATTTAATC
CATAACCTCCACAATCATGGGTTCACACTTGGTATAGCATCAAAAACGCC
AGTTGGTAATTTTGCCAAGGAAGTTTTGCATGCTCTTGAAATTCGAGATT
TTTTCACTTATGATGTTATGGCACCACGTTGTAAAAAATTCCATTTTGAT
GAACTTAGTAAACAAAGTGCTGTACATTATAAAGATatgttgttttttga
tgataATCCTGGAAACATTTATGATATCAATTCACTTGGTGTGACCTGTG
TtcatgttgaaaaaggtttgacAATTGAAGATGTACTCAATGGGTTCCAA
AAATTCCAGGACAAGCATAGCTAAAACCACATATGTTGAAGAAATCTTTG
TTATAATATTATCTTATCTAAGGTTTTGTTCTattctttcttcttataaa
ttttataaaaactttgtaattttttaagtttgtttatatttcttatGAGT
AATGGGTATTGTGGATGCCTATATCCATTATGACACCCAGGGGGGACCCT
CGCCCTGCCggaaaattcagcaaaaatgaGTAGATATGCAAATTTGCCTT
GATATAAGACCGACCTTAAAAATTTTTTCGTTTCCGATCCACCAGGTGAC
GAAAAAGAAAGTCATGCAGGCGGCTGGAAAAATACTTTTTCGATCCTTCT
CatgatttctaataaaaaaattaggaagaaaaaaatcatctctcTGGCTG
TAAGTGTTGCCCCACA

Coding sequence (CDS) from alignment at sc0000053:82831..84046

>TCONS_00005508 ID=TCONS_00005508|Name=TCONS_00005508|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000053:82831..84046 (Clytia hemisphaerica)
ATGGATAAACtctcaaaaatattgaaaaatggaaagaaaTTGCCTGAAAT
GGTTGTCTTTGATTTGGATGAAACCCTTTGGCCATTTTGGTGCATATCAC
ATGTTGAAAAACCAATTAAAAAATGTGACAAAACTGGTAGAGTGACCGGG
AATGATGGTAAAATTGTATCATTGTATCAAGGAGCTTATGATTTAATCCA
TAACCTCCACAATCATGGGTTCACACTTGGTATAGCATCAAAAACGCCAG
TTGGTAATTTTGCCAAGGAAGTTTTGCATGCTCTTGAAATTCGAGATTTT
TTCACTTATGATGTTATGGCACCACGTTGTAAAAAATTCCATTTTGATGA
ACTTAGTAAACAAAGTGCTGTACATTATAAAGATatgttgttttttgatg
ataATCCTGGAAACATTTATGATATCAATTCACTTGGTGTGACCTGTGTt
catgttgaaaaaggtttgacAATTGAAGATGTACTCAATGGGTTCCAAAA
ATTCCAGGACAAGCATAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003126XLOC_003126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005508-proteinTCONS_00005508-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005508-exon-sc0000053-1491911889:82831..84046TCONS_00005508-exon-sc0000053-1491911889:82831..84046Clytia hemisphaericaexon
TCONS_00005508-exon-sc0000053-1510915933:82831..84046TCONS_00005508-exon-sc0000053-1510915933:82831..84046Clytia hemisphaericaexon
TCONS_00005508-exon-sc0000053-1575043694:82831..84046TCONS_00005508-exon-sc0000053-1575043694:82831..84046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:82831..84046 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.9363	58.3707	53.6926	55.6129	3.46831	2.62808	6.43191	7.29362	7.2737	4.37612	4.28326	3.91844	3.74898	4.28269	7.48202	6.16156	10.5527	8.9186	2.84631	4.8204	7.59615	9.02192	28.7615	26.1116	4.35	4.48993	8.40574	6.03211	12.1613	13.984
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010036MDP_1_eu_arc
IPR023214HAD-like_dom
IPR010033HAD_SF_ppase_IIIC
Vocabulary: Molecular Function
TermDefinition
GO:0016791phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016791 phosphatase activity
Blast
[Close]
BLAST of TCONS_00005508 vs. Swiss-Prot (Human)
Match: MGDP1 (Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.827e-29
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = -3 
Query:  396 KLPEMVVFDLDETLWPFWCISHVEKPIKKCDKTGRVTGNDGKIVSLYQGAYDLIHNLHNHGFTLGIASKTPVGNFAKEVLHALEIRDFFTYDVMAPRCKKFHFDELSKQSAVHYKDMLFFDDNPGNIYDINSLGVTCVHVEKGLTIEDVLNGFQKFQDKHS 878
            +LP++ VFDLD TLWPFW  +HV+ P  K    G V    G+ V LY    +++  L + G     AS+T     A ++L   ++  +F +  + P  K  HF+ L +++ + +  M+FFDD   NI D++ LGVTC+H++ G+ ++ +  G + F    +
Sbjct:    3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSD-GTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAKAQT 162
The following BLAST results are available for this feature:
BLAST of TCONS_00005508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGDP11.827e-2932.92Magnesium-dependent phosphatase 1 OS=Homo sapiens ... [more]
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