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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005354 ID=TCONS_00005354|Name=TCONS_00005354|organism=Clytia hemisphaerica|type=transcript|length=4935bpRun BLAST on NCBI protein sequence of TCONS_00005354-protein >TCONS_00005354-protein ID=TCONS_00005354-protein|Name=TCONS_00005354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=879bp MNILRKDKKDEESGIFNPFQGIDKSTVLQESRVFHDTPINTRKCIHILSKRun BLAST on NCBI transcript from alignment at sc0000052:537835..584509- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005354 ID=TCONS_00005354|Name=TCONS_00005354|organism=Clytia hemisphaerica|type=transcript|length=46675bp|location=Sequence derived from alignment at sc0000052:537835..584509- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:537835..584509- >TCONS_00005354 ID=TCONS_00005354|Name=TCONS_00005354|organism=Clytia hemisphaerica|type=CDS|length=52800bp|location=Sequence derived from alignment at sc0000052:537835..584509- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005354 vs. Swiss-Prot (Human)
Match: COPG1 (Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1) HSP 1 Score: 1122.46 bits (2902), Expect = 0.000e+0 Identity = 576/881 (65.38%), Postives = 721/881 (81.84%), Query Frame = 3
Query: 1857 ILRK-DKKDEESGIF-NPFQGIDKSTVLQESRVFHDTPINTRKCIHILSKVLYLINQGTHIGXXXXXXXXXXMTKLFQSKDVTLRRMCYLAIKELANIAEDVIIVTSSLTKDMTGKDEGFRAPAIRALCRITDSQMLAGIERYLKQAIVDKNPXXXXXXXXXXXXXXKPNFDVVKRWVNEAQEAVSSDNVMVQYHGLGLLYHIKQNDRLAVSKLITKQARQSLRSPYAYCLLVRIAAKYIDEDPENPENTPLSEFLESCLRHKSELVIYEAARALVNLKSVKSKDLDPAVSVLQLFLSSPRPTLRFAAVRTLNKVAIMQPQSVMVCNLDLENLITDVNRSIATLAITTLLKIGNENSIDRLMKQISTFMSEISDEFKIVVVEAIRSLCLKFPRKHSVMMNFLSSMLREEGGFGYKKAIVDAVVTIIEDNNDAKESGLAHLCEFIEDCEHTTLATKILHLLGQEGPRTSTPSKYIRFIYNRVILENAEVRAAAVTSLAKFGAHCDALLPSILVLLSRCMMDTDDEVRDRATFYYHVLRKEDKQLASSYILNTLSVSIVGLERALAAYLKEPTDKPFDMKTVPIATVPMHDQKAVKTSGESTGV-AQKASTTSVTTRQDVYAEQLAAVPEIAALGPLFKSTSKPIQLTESETEYVVSCIKHTFADHMVFQFNCTNTLNDQILENVTVQMETGDEAEVVNYIPCHVLKYGTPSTTYTIVQYP-EDAATVSASFTCTLKFIVKXXXXXXXXXXXXXXXXXXXXXXXXXMVVADHVQGVVRTNFLASWDEIDDENEMEETFALSSMSSLEEAVTKITQFIGLQPCERSDRVPEGKSSHTLLLAGVYRGGIDVMVRSRLALKDGVTMHLTVRSQDPIVSEVVMSAVG 4487
+L+K DKKDEESG NPFQ ++KS VLQE+RVF++TPIN RKC HIL+K+LYLINQG H+GTTEATE FFAMTKLFQS D TLRRMCYL IKE++ IAEDVIIVTSSLTKDMTGK++ +R PA+RALC+ITDS ML IERY+KQAIVDK PSV+S+ALVSSLHLLK +FDVVKRWVNEAQEA SSDN+MVQYH LGLLYH+++NDRLAV+K+I+K R L+SP+AYC+++R+A+K ++E+ + ++PL +F+ESCLR+K E+V+YEAA A+VNL +K+L PAVSVLQLF SSP+ LR+AAVRTLNKVA+ P +V CNLDLENL+TD NRSIATLAITTLLK G+E+SIDRLMKQIS+FMSEISDEFK+VVV+AI +LC K+PRKH+V+MNFL +MLREEGGF YK+AIVD +++IIE+N+++KE+GL+HLCEFIEDCE T LAT+ILHLLGQEGP+T+ PSKYIRFIYNRV+LE+ EVRA AV++LAKFGA + +LPSILVLL RC+MD D+EVRDRATFY +VL ++ K L + YILN L+VSI GLERAL Y EP++KPFD+K+VP+AT PM +Q+ EST + A K TRQ+++ EQLAAVPE LGPLFKS+ +P+ LTESETEYV+ C KHTF +HMVFQF+CTNTLNDQ LENVTVQME + EV+ Y+P L Y P T YT+V P ED V+ +F+C +KF VK T DDEGY+DEYVLED+E+ VADH+Q V++ NF A+WDE+ DE E EETF LS++ +LEEAV I +F+G+ PCERSD+VP+ K++HTLLLAGV+RGG D++VRSRL L D VTM +T RS + + ++++++VG
Sbjct: 1 MLKKFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCMMIRVASKQLEEE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLCEFIEDCEFTVLATRILHLLGQEGPKTTNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQYTLEPSEKPFDLKSVPLATAPMAEQRT-----ESTPITAVKQPEKVAATRQEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVK-DCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSLEELPVDIILASVG 874 The following BLAST results are available for this feature:
BLAST of TCONS_00005354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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