TCONS_00005296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005296
Unique NameTCONS_00005296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005296 ID=TCONS_00005296|Name=TCONS_00005296|organism=Clytia hemisphaerica|type=transcript|length=3796bp
ATCAAGAGGTTGTTGTTGTTCATCCTGAGAGTCACTATCGGCGGTGAAAA
CTCGTGCAAGGGCGTTGATCTCTTGTTTGATATTCATGTCATTCGTTACT
ACCTGCTCAAGATCCTCGATCTCATCCTGGATCGGTTTCACAGAATCCAA
TCGGGTTAATGGTTTCGCATCGTTTGATATTGGATTCAGTTGAGTTGAGA
ATTGCTTCGTATCAGATGGCATCGAGTTTTGCTGAGGAAAATCTAATCGG
GTAAACGATTTCGTGTCGGATGATAAAGATGTTTGTTGGGCGGAATCTTG
TCGGGAACTTTGTCTAGAATCGGAAGTTTGCGGattgactttttgaatgt
ttggaAGATATGGATTGACGGTTGGTTGTTTATCTTCTTCTATCTTAGGT
GGTTGGGGTGGTTGATTGGCGGTCTGGGGTGGAGGAGGTGGTGCCGGTGG
CGCTAAAGGTTGATTATTGGTAGATTCTGTTGGTTTCTGTGGTTCTTCTG
CTGGTGTTTGGTTCGTTCTTTGGTTATTTGGTGGATAATGTGATTGTAGA
ATACTTTCAATCCGCGATAAGTCTAAATTGTTGTTAGGTAGTTTCGATGA
AGCTGTTGGGAAATTAGAAGCCGTTGTTCTTGCATTTGTTGGTTCTTGTG
GGTTAAGGCTTCCTTGTTGTGTGGGTGCTAGGTCAGGGTTGGTTGGTAGT
GTAACAGGGTCTTTATTGGTTTCGTCACGTTGTTGACTGGCTGTATCTTG
TGATGATCCACCAGTCGGTAGATATTGTCCACTTTCAGGGGTCATGACGT
ACCCATTAACTGTTGATTTGTATTTGATGGTGTGTGGTGGTAGTATATCT
GTCGTTTGGATGGGTTGGTAGGAGTCTCCGTTCCAGTGGTATAAGACTTG
GTTGTCCTCTTGGTCTTTCTCATAGATTGGAACGGTAGGAGAGGACGGCG
GTAGAGGGTCCTGTTGGGTCGAAGGTCTTTCTGGATCACTTCGTGGTGAT
GCTTCAGTGTGAGTTTGGCCATCTCCATTCCACAGATTTAAGATGTTTTG
TATCTCTTGGTTGGTGATTTCTTGGTATGATTTTGTAGGAGTTGAAGAGG
CTTGGTATGCTTCTGGTGGTGGAGGAGGGGGTACCGGGGGTAAGGGGACA
GGGGTAGAAGGAGGGATGGAAGGAGGTGGTTGGTAGCTGGTAGGTTGAGG
TTGGGAGACAGTTGGCTCCTGGTTATTGTCGTTTTCTATAAAAGAGGCTC
CTGTCCATTTATATGACGGTTTTTCGGAGAGTCCTTGGTCTGTATTGAGA
TAGGAGCTAGGGGCTGATCGATCCTCCATAGGTACGAAGGTAGCACCATT
CCACACATACTGGCGACGGCTACCAAGCTTAGGTTGATTGTCCTTGAAAG
GTTGTTGAAGCGGTGGATTATCTTGTTTCTTTGTGTATTTGACTATAGAA
GCTTTTGgttctttatttctcaaatcATTCATAAATAATTGGTTTTTCGA
CCTTGAGTAATCTGTAAAGTCACTCGCTGGTCGCACTTCTTGAAAACAAG
GGTCGTTGGTCAACGTCTTTTCTTGCTTCACATGGTCAAGGTAAAGGTCT
TtgaaacttgcatatgttttcgCCTTTTTAGAACTTGATTCTGGGCTCAA
CTTATTAGCAGTCACACTCTTCAAAGCAGTTTCATATTTCCCGCCATTTT
TCTTCAGTAACTCAAGAAATGGGTTTGTTTTAGATTCAAAAGCAAACGAA
TCAATATTATTAACTTTCTTCATTATCACGTTCGCTAGCTTAGAATCATC
CTctgctaatttttttcttgaaactaATTTCCCCATCAAATTATGTTTCT
CAAGACTTGTATGCCTTCTCTCCGCTGTCAACTCTAACATTTTCTCCCAA
AGTGTAAAAGCTTGATTATTGAGTCCAGACCTCTTTgtatttttagtatt
ttcaaccaTGAGTCTTAACAACCGTAAATCACGTGACGAAAATACCGGTA
CCGGAGGAACAACATTATAAGCAGAATCAGTTGAATGCAGTTCCGCATCT
TTGAAGTATTTCCGTATGATTTGGTCGATTTCCGTTTGTCGGGCGTCTTG
CAGTTTCTCCAAATCTATAGATCTCGAGTCTAGTGCGTTTTCATCGGTAT
CTATTATTTTTGATGTCATTtcgtttttgattttattattttcctcGTTA
TCCCCTAAAAGCTTTTCTAGAAAGTTTTTTGCTTCTTCTGTATTCATATG
AATGTTATCTCGTGTGGCGGGGGAATCTTCTGATGGCGACTTGAGGGTGG
AAACGCCTTTCAAAGGTGTATGACTGATCTCTATATGAATCAAAGCTTGT
AAAGGTTTGTCATTGTTCGTTAAACTCGACGTGTCATTTGCAAAGGATTG
TTTACTGTTATCAAACAGTTTCATATTTCTGTccacatttttgtcaaaaa
tttcacGTGATGAATTCTTATTTACATTCGCATCCTTTGTTGTTTTAATG
TCGACATCTTTCGATTTTATGGCAGACGATCCCTCCGTAGGAGTGCTCGT
ActgaaatttctattatttaggTCTTTATCAACGTTCTCCTTCGTTGGCG
TTGAAAGCGTATCCTTTGCAGTAACATTATGTAATAGTGGTACTACCCCT
TTCGTTGTTGCAATGGAAATATTTTCGATATCAGTTTCTTGTTGAGAGCT
ACCTTCCATACGCGTGTTATTAACATTTGTGACGTCAATTTGACTATGTT
GTGTTCTATTATCACGGTGTTCTTCTAACGTCTGATAACTTAAATTATTC
GTTTTGTTGAGTAAATTTGTAGCAAGTCCTGTTAAATGCGTGTCTACGGG
TTTTGTTGTGTTCTGTGGAGCCGCTTCTATTGGTTTAACGCTATCACTAG
GTTTGGTTTCTGCTGTTTTGTTTGTCTTCCCATTAGAAGTTGTGTTTact
tctttgtttattttttctgtCCTGTCTTTTTGGGTCTTGTGATCTGATTT
TGCAGCCGTGCTACCATGTTTGTTTTTGGTTTTCGAAGTACGTTGCTGAT
AAATTTTCCCGTGCTCTTTCggctttttcgaatgttttgttttctgtttt
ccCGCCTTTTTATCGTCTTTGTTCCTTCCAATCTGGTCTGCGTCCAACAC
GTTTGTTTCTTCGTGACGCGTTGTGTTTCGATTGCCCGTTAAATTTGTTG
TCGTTTTGGAAACTTCTTCTCTTTTAGCATCCACTGGCATGACAAGCTTC
TTATTATCCGTGAATGCATACTGTGGTCGATCTAAAGCAATACCATTGAT
TCTTCTTGTTGTTTTAGCTTTCCACTGGtcattcaattttcttttatctC
CGTAAATTGGTACACCAGTCACCACGCTGCTTTGATCTGGTTGCGGCTTA
GTCATTGCTTCTGGTTGTAGTTGAACATTAGGGAGATAAGGGTTCTGCAC
AAAGCTGTACGGTTTTTCTTCAATCGGGTTGTCTCTTAGGATAttttggt
ccaaagttttgccTTGCTCATTCGATCTTTGTAAGTTGATAACGTTATAA
AAATATTGGTAAGGCGAGCCTGGATTTTGTGTCCAAGTGTACTCCTGGTT
CCCGaaattgttctttttataagaagcaTAGTAGTTCTGATTTGAATCGA
TGTTTCTATTGTAATCAGTCGCCTGTGCCCTTGGTGCTTTTTTGAGTGTC
TTGAGGATTTTCAGAGCACTTCCGAGAAGACTCAATTGCCCTGCTGCTCC
CGATCTTTCAACATTCTGTCTTGATTGACCAGTTCCTGTTGATGGG
Run BLAST on NCBI

transcript from alignment at sc0000052:599920..603784+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005296 ID=TCONS_00005296|Name=TCONS_00005296|organism=Clytia hemisphaerica|type=transcript|length=3865bp|location=Sequence derived from alignment at sc0000052:599920..603784+ (Clytia hemisphaerica)
ATCAAGAGGTTGTTGTTGTTCATCCTGAGAGTCACTATCGGCGGTGAAAA
CTCGTGCAAGGGCGTTGATCTCTTGTTTGATATTCATGTCATTCGTTACT
ACCTGCTCAAGATCCTCGATCTCATCCTGGATCGGTTTCACAGAATCCAA
TCGGGTTAATGGTTTCGCATCGTTTGATATTGGATTCAGTTGAGTTGAGA
ATTGCTTCGTATCAGATGGCATCGAGTTTTGCTGAGGAAAATCTAATCGG
GTAAACGATTTCGTGTCGGATGATAAAGATGTTTGTTGGGCGGAATCTTG
TCGGGAACTTTGTCTAGAATCGGAAGTTTGCGGattgactttttgaatgt
ttggaAGATATGGATTGACGGTTGGTTGTTTATCTTCTTCTATCTTAGGT
GGTTGGGGTGGTTGATTGGCGGTCTGGGGTGGAGGAGGTGGTGCCGGTGG
CGCTAAAGGTTGATTATTGGTAGATTCTGTTGGTTTCTGTGGTTCTTCTG
CTGGTGTTTGGTTCGTTCTTTGGTTATTTGGTGGATAATGTGATTGTAGA
ATACTTTCAATCCGCGATAAGTCTAAATTGTTGTTAGGTAGTTTCGATGA
AGCTGTTGGGAAATTAGAAGCCGTTGTTCTTGCATTTGTTGGTTCTTGTG
GGTTAAGGCTTCCTTGTTGTGTGGGTGCTAGGTCAGGGTTGGTTGGTAGT
GTAACAGGGTCTTTATTGGTTTCGTCACGTTGTTGACTGGCTGTATCTTG
TGATGATCCACCAGTCGGTAGATATTGTCCACTTTCAGGGGTCATGACGT
ACCCATTAACTGTTGATTTGTATTTGATGGTGTGTGGTGGTAGTATATCT
GTCGTTTGGATGGGTTGGTAGGAGTCTCCGTTCCAGTGGTATAAGACTTG
GTTGTCCTCTTGGTCTTTCTCATAGATTGGAACGGTAGGAGAGGACGGCG
GTAGAGGGTCCTGTTGGGTCGAAGGTCTTTCTGGATCACTTCGTGGTGAT
GCTTCAGTGTGAGTTTGGCCATCTCCATTCCACAGATTTAAGATGTTTTG
TATCTCTTGGTTGGTGATTTCTTGGTATGATTTTGTAGGAGTTGAAGAGG
CTTGGTATGCTTCTGGTGGTGGAGGAGGGGGTACCGGGGGTAAGGGGACA
GGGGTAGAAGGAGGGATGGAAGGAGGTGGTTGGTAGCTGGTAGGTTGAGG
TTGGGAGACAGTTGGCTCCTGGTTATTGTCGTTTTCTATAAAAGAGGCTC
CTGTCCATTTATATGACGGTTTTTCGGAGAGTCCTTGGTCTGTATTGAGA
TAGGAGCTAGGGGCTGATCGATCCTCCATAGGTACGAAGGTAGCACCATT
CCACACATACTGGCGACGGCTACCAAGCTTAGGTTGATTGTCCTTGAAAG
GTTGTTGAAGCGGTGGATTATCTTGTTTCTTTGTGTATTTGACTATAGAA
GCTTTTGgttctttatttctcaaatcATTCATAAATAATTGGTTTTTCGA
CCTTGAGTAATCTGTAAAGTCACTCGCTGGTCGCACTTCTTGAAAACAAG
GGTCGTTGGTCAACGTCTTTTCTTGCTTCACATGGTCAAGGTAAAGGTCT
TtgaaacttgcatatgttttcgCCTTTTTAGAACTTGATTCTGGGCTCAA
CTTATTAGCAGTCACACTCTTCAAAGCAGTTTCATATTTCCCGCCATTTT
TCTTCAGTAACTCAAGAAATGGGTTTGTTTTAGATTCAAAAGCAAACGAA
TCAATATTATTAACTTTCTTCATTATCACATTGGCAAGCTTAGNCGTCTT
GGATTCAAAAGCAAACGAATCAATATTATTAACTTTCTTCATAATAACGT
TCGCTAGCTTAGAATCATCCTctgctaatttttttcttgaaactaATTTC
CCCATCAAATTATGTTTCTCAAGACTTGTATGCCTTCTCTCCGCTGTCAA
CTCTAACATTTTCTCCCAAAGTGTAAAAGCTTGATTATTGAGTCCAGACC
TCTTTgtatttttagtattttcaaccaTGAGTCTTAACAACCGTAAATCA
CGTGACGAAAATACCGGTACCGGAGGAACAACATTATAAGCAGAATCAGT
TGAATGCAGTTCCGCATCTTTGAAGTATTTCCGTATGATTTGGTCGATTT
CCGTTTGTCGGGCGTCTTGCAGTTTCTCCAAATCTATAGATCTCGAGTCT
AGTGCGTTTTCATCGGTATCTATTATTTTTGATGTCATTtcgtttttgat
tttattattttcctcGTTATCCCCTAAAAGCTTTTCTAGAAAGTTTTTTG
CTTCTTCTGTATTCATATGAATGTTATCTCGTGTGGCGGGGGAATCTTCT
GATGGCGACTTGAGGGTGGAAACGCCTTTCAAAGGTGTATGACTGATCTC
TATATGAATCAAAGCTTGTAAAGGTTTGTCATTGTTCGTTAAACTCGACG
TGTCATTTGCAAAGGATTGTTTACTGTTATCAAACAGTTTCATATTTCTG
TccacatttttgtcaaaaatttcacGTGATGAATTCTTATTTACATTCGC
ATCCTTTGTTGTTTTAATGTCGACATCTTTCGATTTTATGGCAGACGATC
CCTCCGTAGGAGTGCTCGTActgaaatttctattatttaggTCTTTATCA
ACGTTCTCCTTCGTTGGCGTTGAAAGCGTATCCTTTGCAGTAACATTATG
TAATAGTGGTACTACCCCTTTCGTTGTTGCAATGGAAATATTTTCGATAT
CAGTTTCTTGTTGAGAGCTACCTTCCATACGCGTGTTATTAACATTTGTG
ACGTCAATTTGACTATGTTGTGTTCTATTATCACGGTGTTCTTCTAACGT
CTGATAACTTAAATTATTCGTTTTGTTGAGTAAATTTGTAGCAAGTCCTG
TTAAATGCGTGTCTACGGGTTTTGTTGTGTTCTGTGGAGCCGCTTCTATT
GGTTTAACGCTATCACTAGGTTTGGTTTCTGCTGTTTTGTTTGTCTTCCC
ATTAGAAGTTGTGTTTacttctttgtttattttttctgtCCTGTCTTTTT
GGGTCTTGTGATCTGATTTTGCAGCCGTGCTACCATGTTTGTTTTTGGTT
TTCGAAGTACGTTGCTGATAAATTTTCCCGTGCTCTTTCggctttttcga
atgttttgttttctgttttccCGCCTTTTTATCGTCTTTGTTCCTTCCAA
TCTGGTCTGCGTCCAACACGTTTGTTTCTTCGTGACGCGTTGTGTTTCGA
TTGCCCGTTAAATTTGTTGTCGTTTTGGAAACTTCTTCTCTTTTAGCATC
CACTGGCATGACAAGCTTCTTATTATCCGTGAATGCATACTGTGGTCGAT
CTAAAGCAATACCATTGATTCTTCTTGTTGTTTTAGCTTTCCACTGGtca
ttcaattttcttttatctCCGTAAATTGGTACACCAGTCACCACGCTGCT
TTGATCTGGTTGCGGCTTAGTCATTGCTTCTGGTTGTAGTTGAACATTAG
GGAGATAAGGGTTCTGCACAAAGCTGTACGGTTTTTCTTCAATCGGGTTG
TCTCTTAGGATAttttggtccaaagttttgccTTGCTCATTCGATCTTTG
TAAGTTGATAACGTTATAAAAATATTGGTAAGGCGAGCCTGGATTTTGTG
TCCAAGTGTACTCCTGGTTCCCGaaattgttctttttataagaagcaTAG
TAGTTCTGATTTGAATCGATGTTTCTATTGTAATCAGTCGCCTGTGCCCT
TGGTGCTTTTTTGAGTGTCTTGAGGATTTTCAGAGCACTTCCGAGAAGAC
TCAATTGCCCTGCTGCTCCCGATCTTTCAACATTCTGTCTTGATTGACCA
GTTCCTGTTGATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003019XLOC_003019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005296-exon-sc0000052-1491911889:599920..601698TCONS_00005296-exon-sc0000052-1491911889:599920..601698Clytia hemisphaericaexon
TCONS_00005296-exon-sc0000052-1510915933:599920..601698TCONS_00005296-exon-sc0000052-1510915933:599920..601698Clytia hemisphaericaexon
TCONS_00005296-exon-sc0000052-1575043694:599920..601698TCONS_00005296-exon-sc0000052-1575043694:599920..601698Clytia hemisphaericaexon
TCONS_00005296-exon-sc0000052-1491911889:601768..603784TCONS_00005296-exon-sc0000052-1491911889:601768..603784Clytia hemisphaericaexon
TCONS_00005296-exon-sc0000052-1510915933:601768..603784TCONS_00005296-exon-sc0000052-1510915933:601768..603784Clytia hemisphaericaexon
TCONS_00005296-exon-sc0000052-1575043694:601768..603784TCONS_00005296-exon-sc0000052-1575043694:601768..603784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:599920..603784 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0109562	0.153147	0.11532	1.73224	3.24105	0.368221	0.620266	0.548602	0.370041	1.0497	1.57843	0.786652	1.91716	1.39648	1.24535	0.268381	0.19981	0.698216	0.886614	0.749548	0.363462	1.74915	2.74283	0.137651	0.0452527	0.00561267	0.0368864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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