TCONS_00005035 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005035
Unique Name	TCONS_00005035
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2251

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000050:82991..88015-

transcript sequence

>TCONS_00005035 ID=TCONS_00005035|Name=TCONS_00005035|organism=Clytia hemisphaerica|type=transcript|length=2251bp
CATCTTATGTGACCTTAGCCATACTGGATAAAGAAGGAAAAAGACTTGAG
AAAAGAAAAACGAATACATGTCCAGGGACACTTCAACCTGAATTTGACGA
AGTTATAACTTTCTCTGTACCTGATGGATCGTTACTGGATACACAGATAT
TAATCAAACTAAAGAGTAAAAGGTTTTTATTACCGAGTAAATTGATAGGA
CAATTTATCATCACACCTGAATCTGAGAGTTGGAAGAAACTTTTAGAAGA
CAATGCANGACATTCAATCCTTCATTCGGGGATGGGTTCACTTTTTGTAT
CCCTCAGAAAGAGGCCAAACAACAGAAACTGTGTTTGACGCAATATGAAA
AGAATCGTTTCTCACAGAAGGATGGGATAGGTCAGATTGAAATGGATTTG
AAATCGGTTCTCACAACGAAAGAAGAAGAATATATCAAGAAATTGTATCC
GTACGATCCTCTCATAGGAGTGGAAAAGGAAACGGGAGCAGTTTACTTAT
CCATGGAATTAGATCGAGATATTTGGGAATTGAAGATCGAAATCGAAGAA
GCAGACATTCTGCCGGAAGACgaagataaagaaaaatgtaCATCTTATGT
GACCTTAGCCATACTGGATAAAGAAGGAAAAAGACTTGAGAAAAGAAAAA
CGAATACATGTCCAGGGACACTTCAACCTGAATTTGACGAAGTTATAACT
TTCTCTGTACCTGATGGATCGTTACTAGATACACAGATATTAATCAAACT
AAAGAGTAAAAGGTTTTTATTACCGAGTAAATTGATAGGACAATTTATCA
TCACACCTGAATCTGAGAGTTGGAAGAAACTTTTAGAAGACAATGCATTG
AAAGCACGTTGGTTTCAAATGTACCATAAGCCGAGCAGTTGATGGTTTGG
AAGAGCTTAGTAAAAAGAAGTTTGGAATAATGCTCTGGTTGTGTTTAACT
GTGAGATATGGGATACCAGCCGTTCCCTTTCCCTATGTTCATCCTTCAAT
TTGAAGACATTTATTGACTCGTATCGGAGAAATATTAGGAAACCACATGT
AGAAAATAATTTAAGAAGAACCTATTTCAGCCCTGGTCTAACGTCTCCAG
TTATTAAATGGTATAATGTGAAGGGTATGAATCATTGGACTTTTGGGAAA
AATATGAAATGTTTAGTTTTACCAGACGTCGTCATATTCtaccaaagtga
tcaacgattAGTAGGCAGATATATTTCATTTCGTCGTTGATTCCAATTCA
TCTTCCAATGTTGGTTGTGGTTTATCCTATGATAAACGATGATGAATCTT
TTAAGTTGCCGGGTATCATCCCGGGGGGTACTTAGCCAAATGGAGGGtat
ggtatgtgccgcccttaagggcaccttttttggatttccaaatttcaaat
ttcagtcccactaagggtgggactttttacccccggaaagatcgTCTTGT
TATAGTAACTCACGTAGAGGGAACTAATCTTAGCgatttttcagttaaaa
aagaacaaatttacCTTCCTGCCACTGGCCAAGGTTGGTTctcacaaaaa
tgtaaaaaaagttGGATTTTTGCTGCTCGCCCAAATTAGTTTCCATAAAG
TAACTTAAGTAAGGAGTTGAGAAAGGGATCAGTCGCCCTTTTCCCCAAGG
TGTAACTTTAAGGCGTAAGTTGGATGAAATTAGGAGGAAAAACttggaga
gattttttagaaatatgtgttctttaTCTTCTAAGAGATCTCACATGTTA
TGACCTTCaattttcttatacaaatgATTCGTATATGATGAGTGTTGATG
AGTGTTCTGATTTCTAAGAAGCCTTTATCacactatttgtctccctaaac
tttttactactttatagttggatgtgttctaaaatctaggaaataaattt
tgcaaagacataatatttgtttttttttagatatagatatttgttttttt
tccacaaaagatgtgttctgaaattttttagggttactaggcaacaagaa
cACATTTGAcgaccttgattatacccctgtctcgtcagaaaaCATCATTA
TTTTTAGCTTATTATTTTAAGAtcttatcagaacagatcaaaatttctag
ctgaaacgtactctcagaacacatcggaaaaaaaggtcaCCTCGCCGACT
CCTTTCGAATATCTaccttcttttgaaaaaaaaacaaaatattttagaaG
TTCTCTGACCTTCCCTGACCTACCTACCTACCAAAATGAAGCAAAACCTC
C

Run BLAST on NCBI

transcript from alignment at sc0000050:82991..88015-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005035 ID=TCONS_00005035|Name=TCONS_00005035|organism=Clytia hemisphaerica|type=transcript|length=5025bp|location=Sequence derived from alignment at sc0000050:82991..88015- (Clytia hemisphaerica)
CATCTTATGTGACCTTAGCCATACTGGATAAAGAAGGAAAAAGACTTGAG
AAAAGAAAAACGAATACATGTCCAGGGACACTTCAACCTGAATTTGACGA
AGTTATAACTTTCTCTGTACCTGATGGATCGTTACTGGATACACAGATAT
TAATCAAACTAAAGAGTAAAAGGTTTTTATTACCGAGTAAATTGATAGGA
CAATTTATCATCACACCTGAATCTGAGAGTTGGAAGAAACTTTTAGAAGA
CAATGCANGACATTCAATCCTTCATTCGGGGATGGGTTCACTTTTTGTAT
CCCTCAGAAAGAGGCCAAACAACAGAAACTGTGTTTGACGCAATATGAAA
AGAATCGTTTCTCACAGAAGGATGGGATAGGTCAGATTGAAATGGATTTG
AAATCGGTTCTCACAACGAAAGAAGAAGAATATATCAAGAAATTGTATCC
GTACGATCCTCTCATAGGAGTGGTATGTAACTCAACTTTTTCCAATTCAA
ATTTATCTTTCACGCTTGTTTTTTTAATATCACTGATACGTCATGGCTCT
GTTGTCTCGTGAGCACATGGTTAACGCTGTCTGGTATATGCTATGATTTC
CCTTATCCTAGAAAGGATAACTATTCTGGGTTAGTGCCCATTCCGTTCAC
ATTGGAGAGATCATCTTTCCTGCCTTCCTACTTTCCTCCCCCTGAATATC
CGTCGTAATTGGTCGAAAAACAACGTTTTAATTTCCTTTACTTCTAAACG
CTGCCCTCAATTTTAACTGTCCCATCTAGAAGTATAAGATAAACACTTTC
GAAAGCACACACGTTTAGAATTTTTCATCGTTTTGTGTCTTTTAATGATG
ATCCAGGATAATCATGTTGTGCTTGCGTTGAAAGTTGTGTTAAGAATTAC
CGTCTCAAAATTCTAAAAATTTGGGAGAATTTGTCGTGAATTGATGTTTT
TAAGTTTTTCGGTCAATCTTTCAGGAAAAGGAAACGGGAGCAGTTTACTT
ATCCATGGAATTAGATCGAGATATTTGGGAATTGAAGATCGAAATCGAAG
AAGCAGACATTCTGCCGGAAGACGAAGATAAAGAAAAATGTAGTAAGATT
CTAAGTGTCTTTAGCTCGTTTAATTAATTTCACCTTGCTTGATTGATTAA
TTGTCTTTTGTAGAAATTTGCTTTAGTATTAACACCTTTGTCCCAGTTTA
ATCACCTTGTAAATTACTCTTAGGTCCCAAATAAACGGGGGGGTGCTCAA
ATAAACAGGGGTGTTGGAAAATTTTCGAGATTTTAAAAAACGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GGGAGGACCTAGTAAGGTCCAGGGGGTTGGAAAATTTTCGGAAAATTAAC
AAGCGGGGAGGCCCGTTTATTTGGCACCTAAGAGTAAGGCTCATTTTTGG
TTTACATTATGAAAAGAAGATTCGGCCTTCAAGTATGTTAAAATTAATGA
ACCTTAGTGCTGAGGAATCGTAGAACGTTTTTTCTCCTATGTAATTTTGA
ACGGGTTTAATATAAAGATGGCTCTTTCTTTAGATTTATTTTTGATATTT
TCCTTTCATTTCAGCATCTTATGTGACCTTAGCCATACTGGATAAAGAAG
GAAAAAGACTTGAGAAAAGAAAAACGAATACATGTCCAGGGACACTTCAA
CCTGAATTTGACGAAGTTATAACTTTCTCTGTACCTGATGGATCGTTACT
AGATACACAGATATTAATCAAACTAAAGAGTAAAAGGTTTTTATTACCGA
GTAAATTGATAGGACAATTTATCATCACACCTGAATCTGAGAGTTGGAAG
AAACTTTTAGAAGACAATGCATTGAAAGCACGTTGGTTTCAAATGTACCA
TAAGCCGAGCAGTTGATGGTTTGGAAGAGCTTAGTAAAAAGAAGTTTGGA
ATAATGCTCTGGTTGTGTTTAACTGTGAGATATGGGATACCAGCCGTTCC
CTTTCCCTATGTTCATCCTTCAATTTGAAGACATTTATTGACTCGTATCG
GAGAAATATTAGGAAACCACATGTAGAAAATAATTTAAGAAGAACCTATT
TCAGCCCTGGTCTAACGTCTCCAGTTATTAAATGGTATAATGTGAAGGGT
ATGAATCATTGGACTTTTGGGAAAAATATGAAATGTTTAGTTTTACCAGA
CGTCGTCATATTCTACCAAAGTGATCAACGATTAGTAGGCAGATATATTT
CATTTCGTCGTTGATTCCAATTCATCTTCCAATGTTGGTTGTGGTTTATC
CTATGATAAACGATGATGAATCTTTTAAGTTGCCGGGTATCATCCCGGGG
GGTACTTAGCCAAATGGAGGGTATGGTATGTGCCGCCCTTAAGGGCACCT
TTTTTGGATTTCCAAATTTCAAATTTCAGTCCCACTAAGGGTGGGACTTT
TTACCCCCGGAAAGATCGTCTTGTTATAGTAACTCACGTAGAGGGAACTA
ATCTTAGCGATTTTTCAGTTAAAAAAGAACAAATTTACCTTCCTGCCACT
GGCCAAGGTTGGTTCTCACAAAAATGTAAAAAAAGTTGGATTTTTGCTGC
TCGCCCAAATTAGTTTCCATAAAGTAACTTAAGTAAGGAGTTGAGAAAGG
GATCAGTCGCCCTTTTCCCCAAGGTGTAACTTTAAGGCGTAAGTTGGATG
AAATTAGGAGGAAAAACTTGGAGAGATTTTTTAGAAATATGTGTTCTTTA
TCTTCTAAGAGATCTCACATGTTATGACCTTCAATTTTCTTATACAAATG
ATTCGTATATGATGAGTGTTGATGAGTGTTCTGATTTCTAAGAAGCCTTT
ATCACACTATTTGTCTCCCTAAACTTTTTACTACTTTATAGTTGGATGTG
TTCTAAAATCTAGGAAATAAATTTTGCAAAGACATAATATTTGTTTTTTT
TTAGATATAGATATTTGTTTTTTTTCCACAAAAGATGTGTTCTGAAATTT
TTTAGGGTTACTAGGCAACAAGAACACATTTGACGACCTTGATTATACCC
CTGTCTCGTCAGAAAACATCATTATTTTTAGCTTATTATTTTAAGATCTT
ATCAGAACAGATCAAAATTTCTAGCTGAAACGTACTCTCAGAACACATCG
GAAAAAAAGGTCACCTCGCCGACTCCTTTCGAATATCTACCTTCTTTTGA
AAAAAAAACAAAATATTTTAGAAGTTCTCTGACCTTCCCTGACCTACCTA
CCTACCAAAATGAAGCAAAACCTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002851	XLOC_002851	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005035-exon-sc0000050-1575043694:87544..88015	TCONS_00005035-exon-sc0000050-1575043694:87544..88015	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1575043694:86924..87041	TCONS_00005035-exon-sc0000050-1575043694:86924..87041	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1575043694:82991..84651	TCONS_00005035-exon-sc0000050-1575043694:82991..84651	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1510915933:87544..88015	TCONS_00005035-exon-sc0000050-1510915933:87544..88015	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1510915933:86924..87041	TCONS_00005035-exon-sc0000050-1510915933:86924..87041	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1510915933:82991..84651	TCONS_00005035-exon-sc0000050-1510915933:82991..84651	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1491911889:87544..88015	TCONS_00005035-exon-sc0000050-1491911889:87544..88015	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1491911889:86924..87041	TCONS_00005035-exon-sc0000050-1491911889:86924..87041	Clytia hemisphaerica	exon
TCONS_00005035-exon-sc0000050-1491911889:82991..84651	TCONS_00005035-exon-sc0000050-1491911889:82991..84651	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000050	supercontig	sc0000050:82991..88015 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.721667	0.655721	0.470262	0.257152	6.53835	4.81304	2.75876	1.90005	1.74998	1.76818	2.83161	1.3184	0.990012	1.30401	0.750106	0.545682	1.83438	1.15949	1.52278	1.3708	1.79	1.0311	1.40404	1.40491	0.611118	1.272	0.548968	0.888545	0.818066	1.21729

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00005035 vs. Swiss-Prot (Human)

BLAST of TCONS_00005035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00005035 (transcript) - C. hemisphaerica