TCONS_00004967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004967
Unique NameTCONS_00004967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004967 ID=TCONS_00004967|Name=TCONS_00004967|organism=Clytia hemisphaerica|type=transcript|length=1144bp
ACATCTCTCTTATTTAAATGTAATATCAAATATCActttattttagagaa
aaaaaacagagaaaGATAAGATGGAGGGGGAATCGTTGGTGTTTTGTGCA
CTAAGCTGGTACCTTTTCAGTACATGCCATACTGTTGTTGATCAGAACTT
TTATTTGGACTATCCGTGCCCCTTGACAATATCATTGAGTCACATGTTTG
TTAACCAATTTGGACTTGCATTGGTTGCATATTTGGCAGGAGCAGATCAA
ATTTTGTTGTCGAAATCACACATAAAGCCAGTGCTATGTTTAGCAGCTTT
TAAAGTGGCTGTCAGTACTTTCTCGCATTACACTGCTTTATTTCTAACTG
TACCCCTCATGGAAGCTCTCAAAGCTATGTCGCCTATTTTCGTTGTCACT
GTCACGAAGTTTTGTTTCGGTGCAAGCTATTCTAATGGAGTTTACTTTTC
ATTGCCTCTGATGATCACTGGCGCAGTAAGTGCAACTTTAACTCAGACCA
AAATTGTTTACAACGGGTTGTTGACGTCATTCTTGATGGTTTGTGCATCG
CAATCACAGAATATCTATCTCAAACAATCATATCATAACGTATCATTGCA
TCCATTAGCCCTTCTTTCAAACGTGCACATGTTTGCATTTTTAATGATTC
TTCCAATCTGGATTGTAGTGGATTTGCCAGTATTAATGGCCAGTGAGATG
CTTCATGAAAAACCACTCGAATTCGTTTTAACTTTTCTCGTCCAAGGATG
TTTGAGTACTGTAACTCATACACTCAAAGGGTTTCTATTGCCCAATTGCT
CCTCACTGACATACTCCGTCATGGAGAATGGGAAGTCACTCACAAAGGTC
ATCATTGGTTTTGTTCGGTATCAAAAACCAACTGGAGTTATCAACGTCCT
TGGAACGTTCGTTGCTGTTTTCGGTGTGTTCTGTTATGCCCATGCAAGAA
ATGATAAGAAAgtaaaatcaaattaattttatcaattttattttttctac
tcAAAAATATTAGTTTGTATAGTTAAGTTTTAGTTTCGTAGAAACTGTAG
TCTATATTTATGTGTTGACCCGGCAAATTTCGCCCTGTATTGAGGAGAGT
TCAGAAATTTCCGTCTTCTTTTATCATTCTCTACTAAACTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00004967-protein

>TCONS_00004967-protein ID=TCONS_00004967-protein|Name=TCONS_00004967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MEGESLVFCALSWYLFSTCHTVVDQNFYLDYPCPLTISLSHMFVNQFGLA
LVAYLAGADQILLSKSHIKPVLCLAAFKVAVSTFSHYTALFLTVPLMEAL
KAMSPIFVVTVTKFCFGASYSNGVYFSLPLMITGAVSATLTQTKIVYNGL
LTSFLMVCASQSQNIYLKQSYHNVSLHPLALLSNVHMFAFLMILPIWIVV
DLPVLMASEMLHEKPLEFVLTFLVQGCLSTVTHTLKGFLLPNCSSLTYSV
MENGKSLTKVIIGFVRYQKPTGVINVLGTFVAVFGVFCYAHARNDKKVKS
N
Run BLAST on NCBI

transcript from alignment at sc0000049:661608..662751

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004967 ID=TCONS_00004967|Name=TCONS_00004967|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at sc0000049:661608..662751 (Clytia hemisphaerica)
TAAAAGTTTAGTAGAGAATGATAAAAGAAGACGGAAATTTCTGAACTCTC
CTCAATACAGGGCGAAATTTGCCGGGTCAACACATAAATATAGACTACAG
TTTCTACGAAACTAAAACTTAACTATACAAACTAATATTTTTgagtagaa
aaaataaaattgataaaattaatttgattttacTTTCTTATCATTTCTTG
CATGGGCATAACAGAACACACCGAAAACAGCAACGAACGTTCCAAGGACG
TTGATAACTCCAGTTGGTTTTTGATACCGAACAAAACCAATGATGACCTT
TGTGAGTGACTTCCCATTCTCCATGACGGAGTATGTCAGTGAGGAGCAAT
TGGGCAATAGAAACCCTTTGAGTGTATGAGTTACAGTACTCAAACATCCT
TGGACGAGAAAAGTTAAAACGAATTCGAGTGGTTTTTCATGAAGCATCTC
ACTGGCCATTAATACTGGCAAATCCACTACAATCCAGATTGGAAGAATCA
TTAAAAATGCAAACATGTGCACGTTTGAAAGAAGGGCTAATGGATGCAAT
GATACGTTATGATATGATTGTTTGAGATAGATATTCTGTGATTGCGATGC
ACAAACCATCAAGAATGACGTCAACAACCCGTTGTAAACAATTTTGGTCT
GAGTTAAAGTTGCACTTACTGCGCCAGTGATCATCAGAGGCAATGAAAAG
TAAACTCCATTAGAATAGCTTGCACCGAAACAAAACTTCGTGACAGTGAC
AACGAAAATAGGCGACATAGCTTTGAGAGCTTCCATGAGGGGTACAGTTA
GAAATAAAGCAGTGTAATGCGAGAAAGTACTGACAGCCACTTTAAAAGCT
GCTAAACATAGCACTGGCTTTATGTGTGATTTCGACAACAAAATTTGATC
TGCTCCTGCCAAATATGCAACCAATGCAAGTCCAAATTGGTTAACAAACA
TGTGACTCAATGATATTGTCAAGGGGCACGGATAGTCCAAATAAAAGTTC
TGATCAACAACAGTATGGCATGTACTGAAAAGGTACCAGCTTAGTGCACA
AAACACCAACGATTCCCCCTCCATCTTATCtttctctgttttttttctct
aaaataaagTGATATTTGATATTACATTTAAATAAGAGAGATGT

Coding sequence (CDS) from alignment at sc0000049:661608..662751

>TCONS_00004967 ID=TCONS_00004967|Name=TCONS_00004967|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000049:661608..662751 (Clytia hemisphaerica)
ttaatttgattttacTTTCTTATCATTTCTTGCATGGGCATAACAGAACA
CACCGAAAACAGCAACGAACGTTCCAAGGACGTTGATAACTCCAGTTGGT
TTTTGATACCGAACAAAACCAATGATGACCTTTGTGAGTGACTTCCCATT
CTCCATGACGGAGTATGTCAGTGAGGAGCAATTGGGCAATAGAAACCCTT
TGAGTGTATGAGTTACAGTACTCAAACATCCTTGGACGAGAAAAGTTAAA
ACGAATTCGAGTGGTTTTTCATGAAGCATCTCACTGGCCATTAATACTGG
CAAATCCACTACAATCCAGATTGGAAGAATCATTAAAAATGCAAACATGT
GCACGTTTGAAAGAAGGGCTAATGGATGCAATGATACGTTATGATATGAT
TGTTTGAGATAGATATTCTGTGATTGCGATGCACAAACCATCAAGAATGA
CGTCAACAACCCGTTGTAAACAATTTTGGTCTGAGTTAAAGTTGCACTTA
CTGCGCCAGTGATCATCAGAGGCAATGAAAAGTAAACTCCATTAGAATAG
CTTGCACCGAAACAAAACTTCGTGACAGTGACAACGAAAATAGGCGACAT
AGCTTTGAGAGCTTCCATGAGGGGTACAGTTAGAAATAAAGCAGTGTAAT
GCGAGAAAGTACTGACAGCCACTTTAAAAGCTGCTAAACATAGCACTGGC
TTTATGTGTGATTTCGACAACAAAATTTGATCTGCTCCTGCCAAATATGC
AACCAATGCAAGTCCAAATTGGTTAACAAACATGTGACTCAATGATATTG
TCAAGGGGCACGGATAGTCCAAATAAAAGTTCTGATCAACAACAGTATGG
CATGTACTGAAAAGGTACCAGCTTAGTGCACAAAACACCAACGATTCCCC
CTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002815XLOC_002815Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004967-proteinTCONS_00004967-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004967-exon-sc0000049-1491911889:661608..662751TCONS_00004967-exon-sc0000049-1491911889:661608..662751Clytia hemisphaericaexon
TCONS_00004967-exon-sc0000049-1510915933:661608..662751TCONS_00004967-exon-sc0000049-1510915933:661608..662751Clytia hemisphaericaexon
TCONS_00004967-exon-sc0000049-1575043694:661608..662751TCONS_00004967-exon-sc0000049-1575043694:661608..662751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:661608..662751 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17385	3.47814	5.54213	5.21195	8.39184	4.97351	5.26858	6.39383	3.19748	6.41616	3.42138	1.92056	3.43202	2.48969	2.26232	3.23709	3.87389	4.17498	3.38818	2.36365	4.91599	4.72412	9.91936	10.798	5.8664	6.18095	4.57854	3.38713	9.93914	10.2551
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004853Sugar_P_trans_dom
Blast
[Close]
BLAST of TCONS_00004967 vs. Swiss-Prot (Human)
Match: S35E1 (Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.438e-20
Identity = 83/320 (25.94%), Postives = 140/320 (43.75%), Query Frame = 2 
Query:   74 EGESLVFCALSWYLFSTCHTVVDQNFYLDYPCPLTISLSHMFVNQFGLA--LVAYL---------------AGADQILLSKSHIKPVLCLAAFKVAVSTFSHYTALFLTVPLMEALKAMSPIFVVTVTKFCFGASYSNGVYFSLPLMITGAVSATLTQTKIVYNGLLTSFLMVCASQSQNIYLKQSYHNVSLHPLALLSNVHMFAFLMILPIWIVVDLPVLMASEML---HEKPLEFVLTFLVQGCLSTVTHTLKGFLLPNCSSLTYSVMENGKSLTKVIIGFVRYQKPTGVINVLGTFVAVFGVFCYAHARNDKKVKSN 973
            EG  +    L WY  S    VV++     +P P+T+SL H+     GL   L A+                  +  +L  + + + VL LA  K   S  +H +   + V     +KA  PI+VV +++       S  VY SL  +I+G + AT+T+      GL+++         QNI+ K+   +  +H L LL+ +   A   ++P W++VDL   + S  L   ++ P   +L   V G  +   + +   +L   S L+YSV    K +  + +  +  + P    NVLG   A+ GVF Y   + D   ++ 
Sbjct:   26 EGARVAALCLLWYALSAGGNVVNKVILSAFPFPVTVSLCHILALCAGLPPLLRAWRVPPAPPVSGPGPSPHPSSGPLLPPRFYPRYVLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSAFLVSSDLTYVYQWPWTLLL-LAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNKTKYDANQQAR 344
The following BLAST results are available for this feature:
BLAST of TCONS_00004967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35E11.438e-2025.94Solute carrier family 35 member E1 OS=Homo sapiens... [more]
back to top