|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004895 ID=TCONS_00004895|Name=TCONS_00004895|organism=Clytia hemisphaerica|type=transcript|length=2025bpRun BLAST on NCBI transcript from alignment at sc0000049:129197..142045- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004895 ID=TCONS_00004895|Name=TCONS_00004895|organism=Clytia hemisphaerica|type=transcript|length=12849bp|location=Sequence derived from alignment at sc0000049:129197..142045- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004895 vs. Swiss-Prot (Human)
Match: EHMT2 (Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3) HSP 1 Score: 222.246 bits (565), Expect = 7.240e-93 Identity = 117/279 (41.94%), Postives = 169/279 (60.57%), Query Frame = 1
Query: 658 RIRTEVGQEKIKPYMYL-SDISMGKEKIPVSCLNEVDDESFPQDFIYVVHPEESKNVSVKRGFSTVSPCKCSGTCTAE-CKCVILSEKNKLWYSEDGILDVSIFDEESPVLYECTPLCSCWSYCPNRVAQKGIRFPLQVFKTRTKGWGLRTLTPITQGSFILSYIGELITDEEAEKRE-DTYLFNLDLKTSGDEPNCMDALRIGNCGRFINHSCDANMKAVKLFTHHRDVSFPEVAFFACVDIQGKEELCFNYGDTFWDVKNENGQY--CKCMSENCQY 1479
++R VG I+ + D++ G E +P+ C+N VD E P+D+ Y+ E+ +++ R + + C C C++ C C LS + WY +DG L E P+++EC CSCW C NRV Q GI+ LQ+++T GWG+R L I QG+FI Y+GELI+D EA+ RE D+YLF+LD K E C+DA GN RFINH CD N+ V++F H+D+ FP +AFF+ DI+ EEL F+YGD FWD+K+ +Y C+C SE C++
Sbjct: 906 KLRLGVGNRAIRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSNCLCGQLS--IRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVREDDSYLFDLDNKDG--EVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS---KYFTCQCGSEKCKH 1177 HSP 2 Score: 138.658 bits (348), Expect = 7.240e-93 Identity = 77/193 (39.90%), Postives = 114/193 (59.07%), Query Frame = 3
Query: 45 HIADQAGKGKINVQDHHNRTPLYMAVDKNHMKVAEFLVKAGANIFCQTTEGTNLLHVASRRGNLLAVKWLIKLG-VPANQQDNFGWTALMWCAESDNNSCIIRYLIKQGALTNLLDNEMNICLHWSAIAGSFECARELVSGSSDPQINAKNKFGETPLHVAAKGDHFNVAQFLLLNGADPNIKNKQNCTALDV 620
H+ QAG IN D RTPL AV NH++VA ++V+ G ++ + +G+ LH A++ GNL V L+ G V N QD+ GWT ++W AE + +IR L+ +GA L DNE NICLHW++ GS A L++ D ++A N G+TPLH+AA+ + + L GA+P ++NK+ TA D+
Sbjct: 702 HVLLQAG-ANINAVDKQQRTPLMEAVVNNHLEVARYMVQRGGCVYSKEEDGSTCLHHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIE-VIRMLLTRGADVTLTDNEENICLHWASFTGSAAIAEVLLNARCD--LHAVNYHGDTPLHIAARESYHDCVLLFLSRGANPELRNKEGDTAWDL 890 The following BLAST results are available for this feature:
BLAST of TCONS_00004895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.