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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004368 ID=TCONS_00004368|Name=TCONS_00004368|organism=Clytia hemisphaerica|type=transcript|length=609bp
AGAAAAAGAGAGTTAGCACTCAGGTTTTAATTTAATCCAAAATGGCGGCT
CGATTAGtacattttacaagaacatgTGCACAACTTTCCAGGAACGATTG
GGAATCTCTGATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGC
ACCAGTTGAAGAAGAGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCG
GCGTTAAACTGATCAAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaa
gaaatcaaaaccaTCCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATT
TGTCGAAAGTGCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATG
CGGAAAAATTGAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATT
GAATAATCCAGAACTTTGGCAATATATGTGTTTCCTTCCTTTATCCATTG
TATGTATAAAATTTCTATCACTaagctttttattttaataaaaaaagaaa
ttatcctAACAAAAGAAAACGGAATTTTTTAAGATGCTCCATCATTCACT
CATCCGtggtgttttttcaattttacttgCTTTAGAAAAATGCCGACTGT
AAGCAAAGT Run BLAST on NCBI transcript from alignment at sc0000044:507484..516443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004368 ID=TCONS_00004368|Name=TCONS_00004368|organism=Clytia hemisphaerica|type=transcript|length=8960bp|location=Sequence derived from alignment at sc0000044:507484..516443+ (Clytia hemisphaerica)
AGAAAAAGAGAGTTAGCACTCAGGTTTTAATTTAATCCAAAATGGCGGCT
CGATTAGtacattttacaagaacatgTGCACAACTTTCCAGGTATTAATt
tccttaattttttttaaatttgaaattctgCATATAGTTTACGTTTTCTA
AAACTGTTGTTGGTTATAAACACCCCTCCCTTTTTTCACTATCCAGTTGT
CTTCGTCATATTGCCTATTGTatcaaaaataatatttcaatttttttttg
taaaagttgaCTGCTGCGTGCTGgtagccattccagggtcaaattgaaac
tattttggtgacaatcaaacctaattcatcttgtagagcttcaaaaaaga
aaaaaaatgaggggtcatacacctcctaatgataagcggttccagagata
ttgagatttttgGTTCATTccgctaaaatagcaccttttttatagacatt
gggctcttccagaaaaaatttgatatagggaaatccagtcaatttttcaa
agtgcttcGGAAATTctgctcaattttttatttcaacccttggaaattcc
acataatttgtcaaagttttgaaaaaggtatcggaaattccagatttttg
caccaaaaaattgattttgtatcgGAAAGCCAggagtttcaattactttt
gtATTGGGAATTGCCGCGCTCGctatttcaatttgaaaacttgtaaacac
ttGTAAGCGCAGAGGTTGACAATTAGGAATCCAGAAGTGGCAAGAGGGGT
CTCCAACTGCAGACTTTtaaatcaaattctttttgtaatggttTGCTAAG
GCGgatctttaaaaattgtttggttcccgtcatttcgactttaaaaagtg
ggtcggtcggtcggtcggtcgaaaatatttttttgtacatataCAGTACT
GTCTTTGATCATTGAAGGTACCTGCATTGTGAGCCCCATAATCATCACGC
AACATCTTGATTTTAGAAAGTGTTCCTTCGCGagcacgaccctcgacatg
gcccgagaattctcgggccaaaacttttattggaattcgcgtaaagcccg
agtatggcccgagctggcccgagaattctcgggccaaaacttttattgga
attcgcgtaaagcccgagtatggcccgagctggcccgagaattcgggccg
ttttcgggccacacgcgggccatgcactggccaatttttgaaaacatgat
ttaaacagctACAGGcatgtaatttcaggactgaatttttttaacatttt
ctttgagaaaaacttggtttctcttaattatattgaATACagtatatgaa
tgttgtaaattcatataaatattaaatgtcttatttggtatgaaaacata
ataaatatacttagggtggaaatatttgctagtagactggtcctggtttt
aaactgaagcgtgtccacgggaaactcgtaaagtttttttgagcgatata
aacaaaacagacaaatcttatttcgtactattttgtttgactggacatgc
tgaatcaatttaacatttaacatggcccgaacatggcccgaatgactcgg
gtcatgttcgggccaaaagaattgatagggtctctcggcccgagcatggc
ccgaagaggcccgagaattctcgggccatgtcgagggtcgttcgCGAGCG
TGGTCTGCTTCCACCCGATTATGAAATCAGGTTAAAAAATCGGTAAAtca
tggataaactggtttttggTTCACTTTCTGCTGGCGTGCCGCGCTCGcta
tttcgatttgaaaacttgtaaacacttGTAAGCTCAGAGGTTGACAATTA
GGAATCCAGAAGTGGCAAAAGGGGTCTCCAACTCTCCGACTCTAACTTCA
GAGtaaaaatcagggtcggtcggatggcgggaaccaaacaatttttagag
ATCCGCCTAAGGCGTCAATCACATATAAGTTGTGTTCGCGCCATTTCCAG
TGCCAAAAAGTGAATCGGTTGGTCGGTCGGCACTAAAATCGTAGGAAAAG
TACGCTCTGAAGCAGTCAGTCACCACTAGAATCATAGGTTTGTTCGCGCA
GCAAGAATTTTCAAGCGCACTAGCTGCATTATGATCTTTGTTACATATCA
CGATTGCAAAAAACAGTCGCATAGCGCTTTTTAAcgcaaacaatctttga
aaaattacagacGGAAAGCTTCTTTGAACAAACACTGGATGATCCAATCG
GCGACTAACGATGAATGTacaaaatgctttgaaaaatattggtaaaaaag
gATTTCCGActgaatattgtcggatttttaagattgaaagtgagtcggtc
ggacgACGTGAACACAACTTATTTGTGATCTACGCctaacacttcaagga
agaaatgaaaagacaaaaaacaataagaacgttataaagcggaagttaaa
attgctgaacctacctatctttgtaatcaaagcgctgcggaggaaaaatt
ccccatggcatataaataactgttttaggctaaaaaagggtcaaattttt
cagtggtaccagtctctataattctagtcctcatttccaggctgaaaatg
cttgccaaagtacgaaaagtaaaaaaaataataactttaataaaagaatt
aatttcagagagtagcaccattggatttctcaggtattttctgataaata
tggaaagtttcactgtctgaacattttttcctccgcagcgctttgNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggaaa
gtttcactgtctgaacattttttcctccgcagctgtttgaaatcaaagat
gagttgtgaatttttttgtgtcccgcagatctaatttttctaaaaatttt
gaccttagttggaacaaatttttagacaaaagtgtagaatattacacctg
catatatatatggttggaaagctaaaagaaagctctaaattactcaaaaa
taattaattttatagctcaactacacaaagaacaattgcttgtcaaagtt
ggacctaaaattgaagattttcatgagcgtcaaataaaaaacaagcaaaa
cccGGAATGGCTACTGCTGGGtggttattattattttatacagctttgaa
aaagaaagaaaacgagGGGTCATAGGGCtccagagctgcgtagttgtctg
agggctatgcatgttagcctccactcatgcaagttacctgatctcacggt
acttaggcaaaaatggatgataggtatgtgcggacggtaagggtcggttt
tttcacctttcaaagtgtctctctaagggtcggaaaaatcagaaagtttt
aaattagtctctctaagggtcagaaaattcAGGACTTTTAggaacttttt
ttatttccagagaaaaaattgtaataaagtctctctaagggtatgacttt
tttcaaaaatcataaaaagaaatttcaaaaagtctctctaagtaagagtc
accttttcagcaaaaatcagtctctctaaggttcggttttcggaggtcat
gtccgcacatacccctcattttgttcacaaactccactgaaagcaatttc
acttgctttcaccttcGCGAGCACAAATTCACAACTTgaaaagtacagtt
ttgaattaggttttataaaaaactattttttcattagCCAGGGCGCTGGC
TTTGGGGTCTGAAGCTTATCAACCCAATactataaaaaatttgaaagtgt
tTTGTCGAGGACCCCTACAGTGTAATCTCCTTATCACGTCAtagattggg
ccattccagaaaatttttgttacccctgTTGGACAACGCACATTTTTTTT
AGCcctggaaatatttttttttcagtggtggtcggaaattcagatcaaaa
tccatgtacttttgcaaaatgtgTCGGAAATCCTAGCTCTTTTTGCCCTC
AGGATTCCGTGTCTtccgccccctgttacagacaaattctgaaATGGTCC
ATTGTTGATGCAAGAAATATGATAAGTATCATTTTcttgaaagaaaactt
taacgattaCTATACTGTAATTAGCATTCTTTCCAGAAAGATATCAAGAT
CCAAACAACTATTAGCACACAACAAATTTTTTAGTAAGCCTTTTTACCCT
GAATCAAAAATGATAAAGAGAACctggtttccttttgaattttaatgtga
ccgccatactggcaACCAACTCTGCCCTGTCAGGAGAAATAAGGGCTTGG
CTACaccagaaaaaattttaaagttcTCATCCATTCCATTCTTTCATCAT
ATCTAGATGCAGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCT
CATCACATTTTTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAAT
TTAACCTTCCCGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAACT
GAACCTACTGGAGGTCTCATCGTTAAATAAATTGTTAAAGGTATTTGTGA
TTGCCTTTTTCAAAATACTTGAGAATCAGTTTGTTTCATGAGTGCTCAAA
GTTCCTTCCTCTTCTTTTGGGACATTTCATCATAGATGTTTTGGCTATTT
TATCTTTTCCGAAATTTTCTGTATAATTATTATTTAAGTAGGGCGAATAG
CCATTATAAAATGTTGAAGAACCTGAAAGACAGTAGttattaaaaatgat
aaataaaaaattgagcatGTCTTTTAAATAGAAAGGAACTCCTCATCTCT
GGTCGATTTTCCAAAATGAGTGCTTAGATGAAAACTCGCCTTGAGATAGA
TCACTGCGGTACATTTTACTTTACAATACTTTGAATTCCATTTCCTGCTG
AACAACTTCGTACTgtaatttttcttctgttttttcAGGAACGATTGGGA
ATCTCTGATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACC
AGTTGAAGTATGTAGGCACCTAAAATTTACGTCACTTTAATGATGTATGC
ATGGTTTTACAGTGAATATTTTAGTTAATTGTTAACTCTCATAATTGTTG
ATGAACGTTTAAACAAGTGTCTCACTGTATTTTTAAAACGAGGGCTTCAT
TTGACAAATGATAGTAACAAATCAAGCCCTTGTTTGAACAGGGTGTCTAC
AGGAccttaaaaaccttgaaattggactaaacaaccttgaaaaccttgtt
AAAGTGAATGTAATATGAGAGaattccttgaaaaccttgaaaatgcatGA
TTGTGACAGTATAGTCTTGTTTTGACTTGGGGTTCTCAATGAAGTTTTGG
TCTATGCTAAAgttccaaatattttcttgctcgcttcgctcgcaatctTT
GTTTCTGCATCAAATTAACGTCCATGCACTTCAGCATAGTCATATCCTAC
TTTAAGTCAATTTTAGTcctgaaaaactttgaaaataccTAATAAAgggt
ccaaaaaaccttgaaaaaaaatttgccaaaaaaaaccttgaaaaccttga
aaatggtgGAAAAAATTCCGTAGATACCCTGTGTTATTTCATGGTGTCCT
ACAGGTTTTCAGGTACCTCAATTCCTTCTTCCCACATAGGAAGAGGAACA
AGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAACTGATCAAGTTTG
ATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaaaaccaTCCTCACT
GACGTCAATCTTGTCCAGGTATTTAataagtatatgtaatcacatgataa
cgagtgcaattagAGAATGATTGCACTAGTCCTTTtgggcataccggata
agtgggattgGGGAACCTgagaacctaaagtgggaacctaaatgaacacc
tgaaaagtgggatgggggaacctaaagtgggaacctaaatgaacacctga
aaagtgggatggggaaacctaagtgggaacctaaatgaacgcctgaaaag
tgggatggggaaacctaagtgggaacctaaatgaacgcctgaaaagtggg
atggggaaacctaagtgggaacctaaatgaacgcctgaaaagtgggatgg
ggaaacctaagtgggaacctaaatgaacgcctgaaaagtgggatggggaa
acctaagtgggaacctaaatgaacacctgaaaagtgggatgggggaacct
aagtgggaacctaaatgaacaccggaaaagtgggatgggtgaacctaagt
gggaacctaagttgtttaattattaatagaattgaaatatttttctttaa
aaacaaatacataatgataagaaagatattatatgcaagtaaagaaaaaa
ccttttatcataataagaacaccagttatttactttttacattacggttc
gcaaacaataatgttgaaaataaaacaaagggaatttatTTATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATTTattcaattagctcaaaaaagcatgtttatttatcagcagtt
ttatagtgcatctttttgaaaggttctttttagtaaattgaATTAATTGA
CTgtaaactttaaactttaaaccgtcatatcttcaaatctagaaggaatt
agaagtttgttcatagctcgatggataacttagagcctcttctttctttt
gcacgGATCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtcaattttgtaaacattggcgcggcattgaagagtgtgattaacgat
taattgctctctttgagggcgtgccaaataagaaaaaataacccatcgtg
cgattaagaAGATAACGACCATTtattacagtcaactctctctagttcga
acttcaacttttttaaattattattcTACTTCCATTATTCTAATCTTTGT
GCATTTACGGAAACAGAAAGTGGTTTGAATTGTTCTTagtaatttgaatt
tttctctaattcgaagaaaattcttggtcctttgaagatcgaataagaga
gagtcaATTGTATGCCTTTTCTTatggggatgagctggagtttttataag
atacttcactaattaattggtcatttgaagtaatagagatgacgcgttct
ttagaaaaagtaatgaaattaacttaacgaccaaccaaatcacataagag
cttgtaaaaactccagcttgtcccttcTTATGAGAGCCATGTATCAAAAA
ATGACGACCAACACAGACTTTTTTATTAATCGTTTTACAGGCCAAGAAAT
TTGTCGAAAGTGCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGAT
GCGGAAAAATTGAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGAT
TGAATAATCCAGAACTTTGGCAATATATGTGTTTCCTTCCTTTATCCATT
GTATGTATAAAATTTCTATCACTaagctttttattttaataaaaaaagaa
attatcctAACAAAAGAAAACGGAATTTTTTAAGATGCTCCATCATTCAC
TCATCCGtggtgttttttcaattttacttgCTTTAGAAAAATGCCGACTG
TAAGCAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004368-exon-sc0000044-1491911889:507484..507574 | TCONS_00004368-exon-sc0000044-1491911889:507484..507574 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1510915933:507484..507574 | TCONS_00004368-exon-sc0000044-1510915933:507484..507574 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1575043694:507484..507574 | TCONS_00004368-exon-sc0000044-1575043694:507484..507574 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1491911889:512322..512390 | TCONS_00004368-exon-sc0000044-1491911889:512322..512390 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1510915933:512322..512390 | TCONS_00004368-exon-sc0000044-1510915933:512322..512390 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1575043694:512322..512390 | TCONS_00004368-exon-sc0000044-1575043694:512322..512390 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1491911889:513023..513151 | TCONS_00004368-exon-sc0000044-1491911889:513023..513151 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1510915933:513023..513151 | TCONS_00004368-exon-sc0000044-1510915933:513023..513151 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1575043694:513023..513151 | TCONS_00004368-exon-sc0000044-1575043694:513023..513151 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1491911889:516124..516443 | TCONS_00004368-exon-sc0000044-1491911889:516124..516443 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1510915933:516124..516443 | TCONS_00004368-exon-sc0000044-1510915933:516124..516443 | Clytia hemisphaerica | exon |
| TCONS_00004368-exon-sc0000044-1575043694:516124..516443 | TCONS_00004368-exon-sc0000044-1575043694:516124..516443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:507484..516443 + |
Blast
The following BLAST results are available for this feature:
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