TCONS_00004180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004180
Unique NameTCONS_00004180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004180 ID=TCONS_00004180|Name=TCONS_00004180|organism=Clytia hemisphaerica|type=transcript|length=4699bp
NNAAAGAGAATTCTCCAGTAAGAAATTTGATAATAACCTGTTTATAAGGA
GATAAATCATACTTTCGACAAAATCTTTGCATCCCCTCGTCTTCATTTGG
TTTGATTTCTAACGTTAATTCCAAAGTTTCTTGGATACTATCTCCCTCTA
TGAAAAGACCCTCGATGTTCTTCGTGGACGTTATTGAATCACGATTGTGT
AAAAGACAAACGTCTTCAGGTGAAATATCTTGGTGTTGCTCAGCCAATAG
CCGTTTCAATTCTTTCTCATTCGTTTCCAACAAACCTTCCAATTTAGATA
ACGGACAATCGtaaaaaatggttggattttcAGGATCTGGGTGTTTTATA
ACGACCGAACGAATACAACTGAGACCTATTTGCTTAGCTCTTTCTGATAA
CTCTGTTTTTGGGTCATCGACCTGAACTACGAGTTTGACAGGCAATACTT
TCGCATTCTCAGTCAGATTCCCCTCTCCCTCAATCATGGAATTATTTTGC
ACTATTCCAAACTTTCGTGAGGCTCTTTCCgacaaaaagaatttctcaat
aTCGTTAGCCGTTACTCTACAACCATCTACAAAAAGTCGCTGTTTGAGCT
TCGGAATTTGTAACGAGTTCTCGATGAATACATCCAACTTCTCTTTTCCC
CTTCGATAATGATATTGCAAGATGTTAGACGTCCCAAAGCCGGATACATT
GACTGGTAATATTGTCTGTATTCCCAATTTCTGATAAAGAGACGTCAGAT
TTTTGTCACTGGTTGAATACACAAACAGCTTTACTCTTACACCCATTCGA
GTGTTGCACATATGTTCAGGGAACGTTTCACTTTCAATGATATCACATTC
TTTAAAATATTCATCTAATATTAGCTGCTCTGCGCAAGGTATTTCATAAT
TTGCTTCGACCCATGACTTTAAAGCAGAAATACCAAGAAGCCCGATTTCC
AAATATGGGTAATGTACCAAAGAATACCTATTTGAATCTGAATAAGGAAG
CTCTAGCTTCACACGTTGTAACATATGATGAGAATGGGGggtaaaaaata
cttttttttccaTCATCATGTTTAAATTCAACTCGAGTAACTCACCCTCA
TTTAAGTCGAGGAGTAAATCAGCTAACAACTGCTCATCATCCAAAAGTAC
GCTTGGACTTTTCTTTGAGCTTAACGCAATAAAGTCACCATCGAGTTTAT
TGCTCTTGCCGATTGTTTTCTTCAAATCTTTCATCGTCAAGTCCGGTTTC
GTTTTAAATTCCATCGTATTGTTCGGTTTGTGTTCATCATTTTTGGGGAT
TTCAATTTGAGGGatttcaatttgaaatgtttCTATCTTCTTACAAATAC
CCTCTCTCCGCTGGCTGACGATATTAGGATATGAGTTTGGCTCAGTAATG
TCGACATTCAATTTGTAATAGTCAACAAATCCACCATACATATACAAAGT
TTCTTCATTCAAAACTTCGTAACGGCTTCTAATGATCTGGTGATCAGGGT
GAATGGTGAATCGTTTTTCGATGTTTTCCTTTAGCTTCTGAAGCGAACCC
TCCACATCGTGCCAATAAAAGATGGATGTTATTAAATTATCTCCAAATTC
CACTACAATTCTGTTTTTCATTTCTCACCTTCAACCTAGTGAAAAGATTA
GATAAAGTTTATGATGCGGTATTCGAGTAAGCCTATTTGCTTTTAAAAAA
GCTCCCCTTTAAAACTTAAATCTTCATCGACAAATTCAAGTTCATTAAGC
TTGTTCTAAAGTGATTTAGACTACCATTTTTACGAACTAGTCGTATGTGC
AGCTTTTATAACGAGTCCCCAATTCCTAAATCATCAAAGCATAAAAAATC
TACCAATAGTCTATCCTGATATATTTCTAAAACAAATGTGGCAAATTAAT
GTCATAGAGCGCTCGATCAGTTCAAAAAACCAGAGCCATgtatcaatatt
tttaaaaagttttcttccattaaaaaaaactaagtaATGTAAATTACTCT
GAGTTTCGTGTTTTCACACTAGTCATTTGTACTAAATGATATATTTCTAT
CATAATGATGTTTTCTTGAGAtgtctattttcaaaaaaaaaattaaaaat
ggaaTCGATTAGAAATGAAATTAATTAGAATTGATTATCAaagcataaaa
aatcaaccaatagCTTTTAAGTATACTTATCTCTTTCAAAAGATTACACC
ATCCGGATATTATTGATAACAACACATAAATCATAAATAGCTGACGGAGC
TGAAATCTTTTTCTCTCTCTTCATTGTTGTTTAAAGATTTGATAGTggta
ctttaattagggacaccctgtactgcAAAATGATTATAATGAGAAAAAAA
GATtagtgtttttacgttttttattaCGATCTATATCATTACAAATACAG
TAACTAGAAATTTATCTAGAATATCACCAGTGAACtgttatcagatagaa
taatatctcactttggctacttcatcatatattcagattccctttgttaa
aagtgattattggtcgtaaaaacagtttctcaaaatctgatgcgtggata
gaaatctctttataagggtatgtttgcatggtattttttctcagttacga
aatttttagttttgaaaaacGATTGATATTTACCAATCTATTTTAGCTTA
CAATCTGGAATTTTAGGAGCTGAAATTTAGTGATTCCGTCGATTTTAact
cctaaaattaaaaaatcaaatttagtcAATACGGAAAGAATAactaattt
aggtgaaaacttTNTTGATTTGTTGCCATCTTCTGTCAGTTCGATGCTTT
CGTGGTAGAGCTGTTGTAAATGCGGCGCAATACCTTTTGTTTTGAAGATC
TCATTCTTAATATCGCGAATAGTGTTCACCTTGCCAGACAAAACATCGAA
TGAAAATTGTCCGGTCAAAAACTTAATGTTTAACTCTTTTAAAAAGGTCA
AGTGATGTTGTTCGCAAAACTTTTGCATATTCTTATCACGGTTTGCTTTG
ATTATTAGTGTTAAGACCAGCTTCTCGCGGAGAGTGTCCTCCTCTACGAA
AAAATCGTTTATGTTGCCTCCAAGCCAATTTATGTGTTTTTGatcatgta
gaagatcaaaGAATTGCAGGGAAATACCTTTGTATTTTTCAATCATGagg
tttttcaatattttataaacttgaaaatttgattCCTGGCCATTTAACTG
AGACAATGGAATTTCATGGAAAATAGTCGAGTCATCTGGGTCTGGGTGCT
TTATGATAATTGATCGCATTCGACTGAGACCTAACTGTTTCACCCTTTCT
AATAATTCTGTTTCTGTATCATCAACCTGGACTGCAAGCTTTATTGAAAG
CGATGTTTGATTGTTAGTCAGATTTTGTTCGTCTCGAATCTGCCCTGTCC
CTGTCAGATTCGCCGTCCTACCCTTATTTACGATATTTTCGATATCGTTA
CTCGAAATTCTACGGCCATCCACAAAAAGTCGCTgtttatttttaggaat
ttgtaACGAGTTCTCGATGAATACATCCAATTGATTCTCATCTCCCCTTC
GATAATGATATTGTAAAACGTTAAACGCTCCAAAGCTGGATACATTAACT
GGAAACATTGTCTTTATCTCCAACTTACGATAAAGAGAGTTTAGATCTTC
GTCACTTGTTGAATACACAGCTATTCTGACTTTCAATGGGCCCAACACAT
GATCGGCCACGTGTTTAGGGAACATTTCATTTTGCTCGATGATTTTGTCT
CGATAAGTGACCTCCTGTTCTGCATAAGGTATTTCAAATGCTGCTTCAAC
CCATGACTTTAAGACAGAAATACCAAGATATCCGTTCTCTAATAATGGGT
AATCTACTTCTAAATCGCTTTCTATGAATGGTATTAAAATCTTTACAGGA
CGTAAAAGATTATAAGTGTGCTCTGTTGCTTCTGTTTGTCGCATAGTCAA
ATTTAACCCAAGCGATTCACCTTTATCCAAACTGAGAAGTAAGTCACTGA
TCAATTGATCGTCAGCAAGAATCAATCTCTGGTTTGTCTTTACTCCTAGT
GACATAGTGTCAACTCCTAGTAtgtttttcttgttaatattcgTCTTTTA
GTCAGCTATTGACAAGTAGGGCTTCGTCTTGAAACTCAACATTTTGTTAA
GTCTGTGTGTCCGATGATCTGGAGTCTCAACTTCGATTATTGGTATATGT
TTACAAATATCATCTCTGCGTTTACGGATGATTCCTGAGTAAAGATTTTC
TTCAATGATTTGGACGCTCAGAATGTTATATCCAGCAAATCGGCTTCCGT
ACAATTCTTGAAAAGATTCTTCATCCAAAACTTCGTGACGGCTTCTAATA
ATCTGGTGATCAGGGTGAATGGTGAATCGTTTTTCGATGTTCTTCTTCAG
CTTCTGAAGTGAACCCTCCACATCGTGCCAATAAAAAGTCGATGTTAAAT
TATCTCCAAATTCTACTACAATTTGATTTATCATTTTCTTTGGAACCtag
aaaaaattttatataatatAACTTTATGAGAAACCTTGCATAGTTTTTTA
TACCCATCATTCATTTCGCCATACAACCTCGCTAAAATACGATGCTTTCT
ATGTAATCAAACAGACACAAACATAAACAACTGACTATGATCATTTTTAC
TCGCCTACTTATAACATGTTTCTTAAACAAGTCTGTATTTTATGTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00004180-protein

>TCONS_00004180-protein ID=TCONS_00004180-protein|Name=TCONS_00004180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp
MKNRIVVEFGDNLITSIFYWHDVEGSLQKLKENIEKRFTIHPDHQIIRSR
YEVLNEETLYMYGGFVDYYKLNVDITEPNSYPNIVSQRREGICKKIETFQ
IEIPQIEIPKNDEHKPNNTMEFKTKPDLTMKDLKKTIGKSNKLDGDFIAL
SSKKSPSVLLDDEQLLADLLLDLNEGELLELNLNMMMEKKVFFTPHSHHM
LQRVKLELPYSDSNRYSLVHYPYLEIGLLGISALKSWVEANYEIPCAEQL
ILDEYFKECDIIESETFPEHMCNTRMGVRVKLFVYSTSDKNLTSLYQKLG
IQTILPVNVSGFGTSNILQYHYRRGKEKLDVFIENSLQIPKLKQRLFVDG
CRVTANDIEKFFLSERASRKFGIVQNNSMIEGEGNLTENAKVLPVKLVVQ
VDDPKTELSERAKQIGLSCIRSVVIKHPDPENPTIFYDCPLSKLEGLLET
NEKELKRLLAEQHQDISPEDVCLLHNRDSITSTKNIEGLFIEGDSIQETL
ELTLEIKPNEDEGMQRFCRKYDLSPYKQVIIKFLTGEFSX
Run BLAST on NCBI

transcript from alignment at sc0000039:517606..522304

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004180 ID=TCONS_00004180|Name=TCONS_00004180|organism=Clytia hemisphaerica|type=transcript|length=4699bp|location=Sequence derived from alignment at sc0000039:517606..522304 (Clytia hemisphaerica)
ATTTACATAAAATACAGACTTGTTTAAGAAACATGTTATAAGTAGGCGAG TAAAAATGATCATAGTCAGTTGTTTATGTTTGTGTCTGTTTGATTACATA GAAAGCATCGTATTTTAGCGAGGTTGTATGGCGAAATGAATGATGGGTAT AAAAAACTATGCAAGGTTTCTCATAAAGTTatattatataaaattttttc taGGTTCCAAAGAAAATGATAAATCAAATTGTAGTAGAATTTGGAGATAA TTTAACATCGACTTTTTATTGGCACGATGTGGAGGGTTCACTTCAGAAGC TGAAGAAGAACATCGAAAAACGATTCACCATTCACCCTGATCACCAGATT ATTAGAAGCCGTCACGAAGTTTTGGATGAAGAATCTTTTCAAGAATTGTA CGGAAGCCGATTTGCTGGATATAACATTCTGAGCGTCCAAATCATTGAAG AAAATCTTTACTCAGGAATCATCCGTAAACGCAGAGATGATATTTGTAAA CATATACCAATAATCGAAGTTGAGACTCCAGATCATCGGACACACAGACT TAACAAAATGTTGAGTTTCAAGACGAAGCCCTACTTGTCAATAGCTGACT AAAAGAcgaatattaacaagaaaaacaTACTAGGAGTTGACACTATGTCA CTAGGAGTAAAGACAAACCAGAGATTGATTCTTGCTGACGATCAATTGAT CAGTGACTTACTTCTCAGTTTGGATAAAGGTGAATCGCTTGGGTTAAATT TGACTATGCGACAAACAGAAGCAACAGAGCACACTTATAATCTTTTACGT CCTGTAAAGATTTTAATACCATTCATAGAAAGCGATTTAGAAGTAGATTA CCCATTATTAGAGAACGGATATCTTGGTATTTCTGTCTTAAAGTCATGGG TTGAAGCAGCATTTGAAATACCTTATGCAGAACAGGAGGTCACTTATCGA GACAAAATCATCGAGCAAAATGAAATGTTCCCTAAACACGTGGCCGATCA TGTGTTGGGCCCATTGAAAGTCAGAATAGCTGTGTATTCAACAAGTGACG AAGATCTAAACTCTCTTTATCGTAAGTTGGAGATAAAGACAATGTTTCCA GTTAATGTATCCAGCTTTGGAGCGTTTAACGTTTTACAATATCATTATCG AAGGGGAGATGAGAATCAATTGGATGTATTCATCGAGAACTCGTtacaaa ttcctaaaaataaacAGCGACTTTTTGTGGATGGCCGTAGAATTTCGAGT AACGATATCGAAAATATCGTAAATAAGGGTAGGACGGCGAATCTGACAGG GACAGGGCAGATTCGAGACGAACAAAATCTGACTAACAATCAAACATCGC TTTCAATAAAGCTTGCAGTCCAGGTTGATGATACAGAAACAGAATTATTA GAAAGGGTGAAACAGTTAGGTCTCAGTCGAATGCGATCAATTATCATAAA GCACCCAGACCCAGATGACTCGACTATTTTCCATGAAATTCCATTGTCTC AGTTAAATGGCCAGGaatcaaattttcaagtttataaaatattgaaaaac ctCATGATTGAAAAATACAAAGGTATTTCCCTGCAATTCtttgatcttct acatgatCAAAAACACATAAATTGGCTTGGAGGCAACATAAACGATTTTT TCGTAGAGGAGGACACTCTCCGCGAGAAGCTGGTCTTAACACTAATAATC AAAGCAAACCGTGATAAGAATATGCAAAAGTTTTGCGAACAACATCACTT GACCTTTTTAAAAGAGTTAAACATTAAGTTTTTGACCGGACAATTTTCAT TCGATGTTTTGTCTGGCAAGGTGAACACTATTCGCGATATTAAGAATGAG ATCTTCAAAACAAAAGGTATTGCGCCGCATTTACAACAGCTCTACCACGA AAGCATCGAACTGACAGAAGATGGCAACAAATCAANAaagttttcaccta aattagtTATTCTTTCCGTATTgactaaatttgattttttaattttagga gtTAAAATCGACGGAATCACTAAATTTCAGCTCCTAAAATTCCAGATTGT AAGCTAAAATAGATTGGTAAATATCAATCgtttttcaaaactaaaaattt cgtaactgagaaaaaataccatgcaaacatacccttataaagagatttct atccacgcatcagattttgagaaactgtttttacgaccaataatcacttt taacaaagggaatctgaatatatgatgaagtagccaaagtgagatattat tctatctgataacaGTTCACTGGTGATATTCTAGATAAATTTCTAGTTAC TGTATTTGTAATGATATAGATCGtaataaaaaacgtaaaaacactaATCT TTTTTTCTCATTATAATCATTTTgcagtacagggtgtccctaattaaagt accACTATCAAATCTTTAAACAACAATGAAGAGAGAGAAAAAGATTTCAG CTCCGTCAGCTATTTATGATTTATGTGTTGTTATCAATAATATCCGGATG GTGTAATCTTTTGAAAGAGATAAGTATACTTAAAAGctattggttgattt tttatgcttTGATAATCAATTCTAATTAATTTCATTTCTAATCGAttcca tttttaattttttttttgaaaatagacaTCTCAAGAAAACATCATTATGA TAGAAATATATCATTTAGTACAAATGACTAGTGTGAAAACACGAAACTCA GAGTAATTTACATtacttagttttttttaatggaagaaaactttttaaaa atattgatacATGGCTCTGGTTTTTTGAACTGATCGAGCGCTCTATGACA TTAATTTGCCACATTTGTTTTAGAAATATATCAGGATAGACTATTGGTAG ATTTTTTATGCTTTGATGATTTAGGAATTGGGGACTCGTTATAAAAGCTG CACATACGACTAGTTCGTAAAAATGGTAGTCTAAATCACTTTAGAACAAG CTTAATGAACTTGAATTTGTCGATGAAGATTTAAGTTTTAAAGGGGAGCT TTTTTAAAAGCAAATAGGCTTACTCGAATACCGCATCATAAACTTTATCT AATCTTTTCACTAGGTTGAAGGTGAGAAATGAAAAACAGAATTGTAGTGG AATTTGGAGATAATTTAATAACATCCATCTTTTATTGGCACGATGTGGAG GGTTCGCTTCAGAAGCTAAAGGAAAACATCGAAAAACGATTCACCATTCA CCCTGATCACCAGATCATTAGAAGCCGTTACGAAGTTTTGAATGAAGAAA CTTTGTATATGTATGGTGGATTTGTTGACTATTACAAATTGAATGTCGAC ATTACTGAGCCAAACTCATATCCTAATATCGTCAGCCAGCGGAGAGAGGG TATTTGTAAGAAGATAGaaacatttcaaattgaaatCCCTCAAATTGAAA TCCCCAAAAATGATGAACACAAACCGAACAATACGATGGAATTTAAAACG AAACCGGACTTGACGATGAAAGATTTGAAGAAAACAATCGGCAAGAGCAA TAAACTCGATGGTGACTTTATTGCGTTAAGCTCAAAGAAAAGTCCAAGCG TACTTTTGGATGATGAGCAGTTGTTAGCTGATTTACTCCTCGACTTAAAT GAGGGTGAGTTACTCGAGTTGAATTTAAACATGATGAtggaaaaaaaagt attttttaccCCCCATTCTCATCATATGTTACAACGTGTGAAGCTAGAGC TTCCTTATTCAGATTCAAATAGGTATTCTTTGGTACATTACCCATATTTG GAAATCGGGCTTCTTGGTATTTCTGCTTTAAAGTCATGGGTCGAAGCAAA TTATGAAATACCTTGCGCAGAGCAGCTAATATTAGATGAATATTTTAAAG AATGTGATATCATTGAAAGTGAAACGTTCCCTGAACATATGTGCAACACT CGAATGGGTGTAAGAGTAAAGCTGTTTGTGTATTCAACCAGTGACAAAAA TCTGACGTCTCTTTATCAGAAATTGGGAATACAGACAATATTACCAGTCA ATGTATCCGGCTTTGGGACGTCTAACATCTTGCAATATCATTATCGAAGG GGAAAAGAGAAGTTGGATGTATTCATCGAGAACTCGTTACAAATTCCGAA GCTCAAACAGCGACTTTTTGTAGATGGTTGTAGAGTAACGGCTAACGAta ttgagaaattctttttgtcGGAAAGAGCCTCACGAAAGTTTGGAATAGTG CAAAATAATTCCATGATTGAGGGAGAGGGGAATCTGACTGAGAATGCGAA AGTATTGCCTGTCAAACTCGTAGTTCAGGTCGATGACCCAAAAACAGAGT TATCAGAAAGAGCTAAGCAAATAGGTCTCAGTTGTATTCGTTCGGTCGTT ATAAAACACCCAGATCCTgaaaatccaaccattttttaCGATTGTCCGTT ATCTAAATTGGAAGGTTTGTTGGAAACGAATGAGAAAGAATTGAAACGGC TATTGGCTGAGCAACACCAAGATATTTCACCTGAAGACGTTTGTCTTTTA CACAATCGTGATTCAATAACGTCCACGAAGAACATCGAGGGTCTTTTCAT AGAGGGAGATAGTATCCAAGAAACTTTGGAATTAACGTTAGAAATCAAAC CAAATGAAGACGAGGGGATGCAAAGATTTTGTCGAAAGTATGATTTATCT CCTTATAAACAGGTTATTATCAAATTTCTTACTGGAGAATTCTCTTTNN

Coding sequence (CDS) from alignment at sc0000039:517606..522304

>TCONS_00004180 ID=TCONS_00004180|Name=TCONS_00004180|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000039:517606..522304 (Clytia hemisphaerica)
ATGAAAAACAGAATTGTAGTGGAATTTGGAGATAATTTAATAACATCCAT
CTTTTATTGGCACGATGTGGAGGGTTCGCTTCAGAAGCTAAAGGAAAACA
TCGAAAAACGATTCACCATTCACCCTGATCACCAGATCATTAGAAGCCGT
TACGAAGTTTTGAATGAAGAAACTTTGTATATGTATGGTGGATTTGTTGA
CTATTACAAATTGAATGTCGACATTACTGAGCCAAACTCATATCCTAATA
TCGTCAGCCAGCGGAGAGAGGGTATTTGTAAGAAGATAGaaacatttcaa
attgaaatCCCTCAAATTGAAATCCCCAAAAATGATGAACACAAACCGAA
CAATACGATGGAATTTAAAACGAAACCGGACTTGACGATGAAAGATTTGA
AGAAAACAATCGGCAAGAGCAATAAACTCGATGGTGACTTTATTGCGTTA
AGCTCAAAGAAAAGTCCAAGCGTACTTTTGGATGATGAGCAGTTGTTAGC
TGATTTACTCCTCGACTTAAATGAGGGTGAGTTACTCGAGTTGAATTTAA
ACATGATGAtggaaaaaaaagtattttttaccCCCCATTCTCATCATATG
TTACAACGTGTGAAGCTAGAGCTTCCTTATTCAGATTCAAATAGGTATTC
TTTGGTACATTACCCATATTTGGAAATCGGGCTTCTTGGTATTTCTGCTT
TAAAGTCATGGGTCGAAGCAAATTATGAAATACCTTGCGCAGAGCAGCTA
ATATTAGATGAATATTTTAAAGAATGTGATATCATTGAAAGTGAAACGTT
CCCTGAACATATGTGCAACACTCGAATGGGTGTAAGAGTAAAGCTGTTTG
TGTATTCAACCAGTGACAAAAATCTGACGTCTCTTTATCAGAAATTGGGA
ATACAGACAATATTACCAGTCAATGTATCCGGCTTTGGGACGTCTAACAT
CTTGCAATATCATTATCGAAGGGGAAAAGAGAAGTTGGATGTATTCATCG
AGAACTCGTTACAAATTCCGAAGCTCAAACAGCGACTTTTTGTAGATGGT
TGTAGAGTAACGGCTAACGAtattgagaaattctttttgtcGGAAAGAGC
CTCACGAAAGTTTGGAATAGTGCAAAATAATTCCATGATTGAGGGAGAGG
GGAATCTGACTGAGAATGCGAAAGTATTGCCTGTCAAACTCGTAGTTCAG
GTCGATGACCCAAAAACAGAGTTATCAGAAAGAGCTAAGCAAATAGGTCT
CAGTTGTATTCGTTCGGTCGTTATAAAACACCCAGATCCTgaaaatccaa
ccattttttaCGATTGTCCGTTATCTAAATTGGAAGGTTTGTTGGAAACG
AATGAGAAAGAATTGAAACGGCTATTGGCTGAGCAACACCAAGATATTTC
ACCTGAAGACGTTTGTCTTTTACACAATCGTGATTCAATAACGTCCACGA
AGAACATCGAGGGTCTTTTCATAGAGGGAGATAGTATCCAAGAAACTTTG
GAATTAACGTTAGAAATCAAACCAAATGAAGACGAGGGGATGCAAAGATT
TTGTCGAAAGTATGATTTATCTCCTTATAAACAGGTTATTATCAAATTTC
TTACTGGAGAATTCTCTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002330XLOC_002330Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004180-proteinTCONS_00004180-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004180-exon-sc0000039-1491911889:517606..522304TCONS_00004180-exon-sc0000039-1491911889:517606..522304Clytia hemisphaericaexon
TCONS_00004180-exon-sc0000039-1510915933:517606..522304TCONS_00004180-exon-sc0000039-1510915933:517606..522304Clytia hemisphaericaexon
TCONS_00004180-exon-sc0000039-1575043694:517606..522304TCONS_00004180-exon-sc0000039-1575043694:517606..522304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:517606..522304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213844 0.352825 0.540194 0.476348 4.17925 2.59521 2.6826 3.29308 1.2166 4.03217 3.61758 1.15734 4.79069 2.05416 1.34837 4.22086 1.02353 2.31408 2.76236 4.95778 1.22138 1.72648 0.403983 0.802847 1.0908 1.40472 6.79571 3.1298 6.98708 5.70026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top