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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003498 ID=TCONS_00003498|Name=TCONS_00003498|organism=Clytia hemisphaerica|type=transcript|length=3274bpRun BLAST on NCBI protein sequence of TCONS_00003498-protein >TCONS_00003498-protein ID=TCONS_00003498-protein|Name=TCONS_00003498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp METKIIYFTVSDQEEQAEFSSDALSEDIKDCFRCAAEAGPYDILKLYNHKRun BLAST on NCBI transcript from alignment at sc0000028:671912..691794- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003498 ID=TCONS_00003498|Name=TCONS_00003498|organism=Clytia hemisphaerica|type=transcript|length=19883bp|location=Sequence derived from alignment at sc0000028:671912..691794- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:671912..691794- >TCONS_00003498 ID=TCONS_00003498|Name=TCONS_00003498|organism=Clytia hemisphaerica|type=CDS|length=25701bp|location=Sequence derived from alignment at sc0000028:671912..691794- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003498 vs. Swiss-Prot (Human)
Match: PDE9A (High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A OS=Homo sapiens GN=PDE9A PE=1 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 2.785e-122 Identity = 175/310 (56.45%), Postives = 237/310 (76.45%), Query Frame = 3
Query: 603 LTSEETLEHLRRPTFDNWQWEDAEMMFLVQQMFLDLGLVETFHIEVPVLQQFIFEVYKHYNLVPFHNFRHCFCVTQMMYGMICLSEVNQRITPHEVLIMLVSAFCHDLDHPGYNNIYQVNARTELAIRYNDISPLENHHAAVAFDILSQPRCNIFKNIKSDIYKKIREGIIKLILATDMAKHSELVNEFKTTMEKKFDWLSPDHKESMMKMFIKAADVSNETRPMDVAEPWLECLLQEFFQQSDAEKLEGLPTAPFMDREKVTKSSAQIGFIKFVLIPLYQSLSELFPAFEDFLLNPILRAFEYYVEMGR 1532
L S ET+E LR+PTFD W WE EM+ ++ M+ DLGLV F I L++++F V+ +Y PFHNFRHCFCV QMMY M+ L + ++ + ++LI++ +A CHDLDHPGYNN YQ+NARTELA+RYNDISPLENHH AVAF IL++P CNIF NI D +K+IR+G+I LILATDMA+H+E+++ FK ME FD+ + +H + + IK D+SNE RPM+VAEPW++CLL+E+F QSD EK EGLP APFMDR+KVTK++AQIGFIKFVLIP+++++++LFP E+ +L P+ + + Y E+ R
Sbjct: 247 LLSPETIEALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKME-NFDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKR 555 The following BLAST results are available for this feature:
BLAST of TCONS_00003498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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