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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002899 ID=TCONS_00002899|Name=TCONS_00002899|organism=Clytia hemisphaerica|type=transcript|length=3462bpRun BLAST on NCBI transcript from alignment at sc0000023:936643..957887- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002899 ID=TCONS_00002899|Name=TCONS_00002899|organism=Clytia hemisphaerica|type=transcript|length=21245bp|location=Sequence derived from alignment at sc0000023:936643..957887- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002899 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 203.756 bits (517), Expect = 6.834e-53 Identity = 205/634 (32.33%), Postives = 266/634 (41.96%), Query Frame = 1
Query: 1495 CILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYR-PVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCR-RGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCP--AVCDAKALCKNVKCNEKIFEFCEVNEKACTARCVCPSVCTKEFRPVCGSDGVTYGNECMMRVQTCITGGRVVKKFDESCESCQN-VCARVDCKPNHACVNLPDKCSA-QCVDTMQCPI-GDPCKGITCGK-----GNKCVRNFASCSYSCQPIVCPKILCVQPACAGNPCPKGQKCIDNFCPSSCVSACEIKRCRK------------PCTREY-------RPICGSDGKTYSNPCVFSIAVCESGGKLTKKSDGRC 3300
C + PVCGSD TYSN C L A C +I +S GPC +D CS N+ C GS C T C+C C VCGSDG Y EC+L + +C ++ KK DG C A+ R CR V+ T + R CP + PVCG DGVTY NDC++ + L+ G C G + C C + A C+ SR+ R RC C + C +PVC +G+TY ++C A CR Q I KH G C++ C V+C F + C K + C+C +AC ++ PVCG+DGVTY + C L+ C +I G C C ALC +A T RCVCPS C +PVCGSDG TY +ECM+ V C + CE+C + VCA CSA QCV CP P G CG G+ C A+C Q ++ A AG PC + + C S CE + CR+ PC ++ P+CGSDG TYS C A CES L + G C
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCS----------------------------NVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCR------VNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQG--RDQCPE-PCRFNAVCL--SRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCA--VKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALC-----------------EAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCA------------FGAVCSAGQCV----CPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQ---------IEEARAG-PCEQAE-CGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 2 Score: 137.117 bits (344), Expect = 2.451e-32 Identity = 166/576 (28.82%), Postives = 233/576 (40.45%), Query Frame = 1
Query: 1270 IACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXX--XXXXXXFGARCVQDPRTCNTKCECPGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCP-------------------CKDQC---SKTTCGKD-----RRCFWNTKTCKAECPCAI-------SCANILCIIGSRCEHDPKKCTTKCVCNEICTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKA----CPAVCTKPRKCRPEA----RCLVDKETCKESCTCRRGCPKI-KRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVF---NSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCP-------AVCDAKALCKNVKCNEKIFEF-CEVNEKACTARCVCPSVCTKEFRP--VCGSDGVTYGNECMMRVQTCITGGRV 2823
+ C PVC DG+TYD++C A CR +R + KH GPC +C FGA C + CEC AC L+ PVCGSDG TY +AC L C G +I +GPC C +C ++ CG D C + C + + +C + +C G+ C +CVC PVCGSDG TY + CEL +A+C I + G C +A + + C E + D+++ C C C + PVCG+DGVTY+ +C LK ARCES+ L + +G C G V + A+ + R V GCP + C +G +Y C C + + +C++C+ N FR + D C C C+ G D+ C C K + G+CP A C+A A C E EF E++ +A CVCP + E VCGSDGVTYGNEC ++ C G ++
Sbjct: 419 VTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCS------AGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTFAPLPPVAPLHCAQTPYGCCQDNITAARGVGLAGCPSACQ--CNPHG-SYGGTCDPATGQCSCRPGVGGL---RCDRCEPGFWN----FRGIVTDGRSGCT-PCSCD------------PQGAVRDD-CEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADA-SAPATCAEMRCEFGARCVEESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQI 961 The following BLAST results are available for this feature:
BLAST of TCONS_00002899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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