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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002420 ID=TCONS_00002420|Name=TCONS_00002420|organism=Clytia hemisphaerica|type=transcript|length=7304bpRun BLAST on NCBI transcript from alignment at sc0000020:143223..187880+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002420 ID=TCONS_00002420|Name=TCONS_00002420|organism=Clytia hemisphaerica|type=transcript|length=44658bp|location=Sequence derived from alignment at sc0000020:143223..187880+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002420 vs. Swiss-Prot (Human)
Match: PRKDC (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3) HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0 Identity = 459/1426 (32.19%), Postives = 755/1426 (52.95%), Query Frame = 3
Query: 18 AHKEDMRGETLFLELRRLYHCAAYNCIISIISCTQVELKFYTGLLFTENVAKGQFLLENLIDTDREYKFESVLNSHFDRKQTLSMLRRNKEDDGLNDANTKSRSRGKANAGYLST-QFLMETSLSQDVNRFDFNDPIEAYXXXXXXXXXXXXXXXXXXXXXXXL------MEMDELNQHEIMSILLSLIHHMKNKQIYKXXXXXXXXXXXXXXXXSWMVYLQKKLTARDTHVNIKLFIAKLIINEPKIFEPYGTYWYPSLIDLILSSHIPGPPINYFTIDLVVVMLSWS----KTNIPPDTVVSRNMCSSLLEYLIKYTHHTNRSVLKNNLQVIKTLLQVWKDRLQIPYQLIHTFFNNQDSEKKDSSTGLQLLGLVIKADFSPFAPQSSAGLSKHEFFTNLTNCLHF-KYKEVYATAAEVCGLALNYYQEHQEANELEFLLGNVSQELSNHSKKNKDLLVLCVFHMQSYYPNIVDRYIAPLLYCVTELYGVLRTNCIQALTSRVQHLTNEQHQEIYKQIQGKDLEGLLSHRDEEAQSETIRLIHGMLPNLTTDQLSEVLPLIANLQQNEYTSVRELTYDVFIWIYENCREDESR-----KSVLQLSKEVLVLGINDSNTKLSLKVLNFWRDESNLPKETIERTIEVVRALYSSKTEREYLSYASNLIMQLTSLSPDYTLPLFPNGLDSDEHFRNFNVNFSWQRQQTANLTPLFIATQRSTAS------QGSYSLTQKSQGEFMGIRAXXXXXXXXXXXXXXXXXGSLNWMNPTVQVDSSLATLSNARQSSPTSILSDTPMDIDSIDGRPINARRRPSQSQNPD-----------------KAA----DILRLKRKFLKDQMTRNQHFAAIEIKRQKMREVAMERRKAAKDKKVSMYRKYRVGELPDIQIKHSELIVPLQALSQLDSKMGTKLFTSVLNAIISNLPEKLDENSVDRVYRDLEQALDIMLRSSTINESAFTSALQNL-CYTNKQLKLEPGLISTSSTASMQQPVGILLLEKQLLSNMGNGEKSAKRRRMESEKPEDVATWLEVSRLYESIDDFDWLRSVFSSHVSQSETTKNALSAETQNNYELALSLYKKAXXXXXXXXXXXXXXXXXYLDNARMRCYQNLCLWDKLKKFTTSSAAQLLDQDDSVGEGGSFDAMALWKDDELQETHLPYYIQSNIKLLCQGKVDHVSDDFDSFITNSLKEGAPKEHLQGKYSLQLALLNIFKDDLGAGEHFLNISSQQFLSEWSVLSTLVSASRQKKLEQLQKIVELEEYISMRKANGHHQAK-QVESLLNTWSNRLPSLKA-PLHVWDDIVMTRCSLIRKLKS-----ANEDDLNLSKYLDGEETKNI---------------------LFIADVARKQGNLAVCNQYLKESYNGAISNDQTMNLSFQWRYIYSKL 4076
A E+M GE LE RRLYHCAAYNC IS+I C ELKFY G LF+E K + ENLID R Y F + +RK+ +R+ + D++ S Y+S+ +L +++LS+++++FDF+ +++YS S + ++ T+ +EMDELN+HE M+ L +L+ HM P LPSWM +L KL +NI+LF+AKL+IN ++F PY +W L+ L S + G I+Y +++V +LSW+ T +P D V++ + LL +L+K+ H R+V ++NL++IKTL++ WKD L IPY+LI F+ +D KD+S G+QLLG+V+ D P+ PQ G+ E+F L N + F +YKEVYA AAEV GL L Y E + E E L V+++L H +D ++C+ + +P + DR++ + + + + +GVL+T C++ + RV+ +T E+Y Q++ KD ++ HRD+E Q + +I+ M+P L +L E+L + + T+ RE Y++ +WI++N R+ ES + + +L+K+VL+ G+ D N L L + NFW E+ LP T++R + + +LYS K E +LS A+N ++++TS+SPDY P+F + L S+ F+ + ++ W+ + T LTP+F+ TQ S + +GS S G+ IRA Q + S +W+ SS L + S S+L R +R P +S PD K A D+LRL+R+F++DQ + +A + QK + K +D +V +YR YR G+LPDIQIKHS LI PLQA++Q D + +LF+S+ + I+ + + + + + + L Q + L ++ F S +Q++ C L L+P +S AS+QQPVGI LLE+ LL + E AKR R ++ P DV W+E+++LY SI ++D LR +F+S + + T++AL AE +++Y A Y +A + + PTE+E+++ + A + CY +L W L+ +T+S +D ++ D +W + QET+LPY I+S +KLL QG+ D +FI ++ K L+ YS +L+LL + +DD+ ++++ Q F+ +S + L+ SR KL+ +Q + E++E+IS G+ ++ ++ LLNTW+NR P K P+++WDDI+ RC + K++ ++ +N+ + DG+ + + + + D ARKQ N ++ + LKE + + + D + W Y +L
Sbjct: 1922 AFTENMAGENQLLERRRLYHCAAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKRRYNFPVEVEVPMERKKKYIEIRKEAREAANGDSDGPS---------YMSSLSYLADSTLSEEMSQFDFSTGVQSYSYSSQDPRPATGRFRRREQRDPTVHDDVLELEMDELNRHECMAPLTALVKHMHRS----LGPPQGEEDSVPRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVATILSWTGLATPTGVPKDEVLA----NRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQ--CGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVMERKNILE-ESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCRVEGMT-----ELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCREQMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLL-ALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPL-SECEFQEYTIDSDWRFRSTV-LTPMFVETQASQGTLQTRTQEGSLSARWPVAGQ---IRA-TQQQHDFTLTQTADGRSSFDWLT-----GSSTDPLVDHTSPSSDSLL--------FAHKRSERLQRAPLKSVGPDFGKKRLGLPGDEVDNKVKGAAGRTDLLRLRRRFMRDQEKLSLMYARKGVAEQKREKEIKSELKMKQDAQVVLYRSYRHGDLPDIQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLL-PAELPAKRVRGKARLPPDVLRWVELAKLYRSIGEYDVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAEWKSLEYCSTAS----IDSENPP------DLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQ---SLLTFIDKAMHGELQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLTPLPEDNSMNVDQ--DGDPSDRMEVQEQEEDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLKELHKESKTRDDWL---VSWVQSYCRL 3283 HSP 2 Score: 522.316 bits (1344), Expect = 1.949e-149 Identity = 289/754 (38.33%), Postives = 430/754 (57.03%), Query Frame = 2
Query: 4511 IKMYQYSDDKLKSKGEVDAEDADNVE---HAMNIVQNLLSAMKLNSDKARLRFPRLLQVVEKFVA-TRDEFTKAVKEIPCWMFLDWINQIVAVIDKPIQECVQPILKGVARAYPQALMYPLGVCKDQLAFDGTVEGQKMRKFFEELSNTI-RCDLLQPFSDALLQMTHPNLLLKDLMEELGKHVETRDQRKVKDFFRQNFAKFFIGETTRRGRDSAPGTQDXXXXXXXXXXXXXXYYFEAGSLGKKLKDIVKKEL----GKDGEKLVGMSLSGYMALKAKILKQLENHKDFRGNLQHFSPWLSQFQADMFNQHLEIPGQYSGKRKPMLEYHVKIAGFDEKILIMSSIRKPKRLTIRGNDQREYKFLVKGGEDLRQDQRIEQVFELMNTVFGNDAGCRNHRMLLKTYKVIPVTQRVGLIEWVDNTQPYKTLLMGAMTDREQKAYNSSD-GPMVKHRKF-TDVKYK----TYSELTNRASRSEVIKVISDLQNMASNDLLRRAFSRMASSNEAYFVLRSRFVQSHSYMCIAQYILGIGDRHLDNTLIDMTTGACVGIDFGHAFGSATQLLGVPELVPFRLTHQMLTFLSPIKDASPYKQYMMSALHALRKQSALLLNTMDVFIQEPLLDWQKYALKLEARMKSSNEKGKTNV----WDPRFKVNVCKMKLSGINPAYIMSQDLEYGVFLNNKSLNRKVQAVAEGDPHQNYRAAMLKATKDPSTHVLNVEEQVDCLVDLATDKNVIGRIFSGWSPWI 6715
+ + + D +L+ K E +A D+ E + +V+ +L A+KLNS++ARL+FPRLLQ++E++ T TK + +PCW F+ WI+ +VA++DK VQ ++ + YPQA++YP + + +F T G K ++F + + + + ++Q F +AL Q+++P LL KD ++ R + ++N K + G APG G+ +K KE GK G KL+ M LS + + +L ++ GNL+ SPW+S F+ + LEIPGQY G+ KP+ EYHV+IAGFDE++ +M+S+R+PKR+ IRG+D+RE+ FLVKGGEDLRQDQR+EQ+F++MN + D+ C + L+TY V+P+T R+GLIEW++NT K LL+ M+ E+ AY S P +++ + T + K Y + A+R+E + ++ DLL+RAF RM++S EA+ LRS F SH+ +CI+ +ILGIGDRHL+N ++ M TG +GIDFGHAFGSATQ L VPEL+PFRLT Q + + P+K+ M+ AL A R LL NTMDVF++EP DW+ + K+ K + + NV W PR K+ K KL+G NPA I +L G R AVA G N RA ++P + L+ E QV CL+D ATD N++GR + GW PW+
Sbjct: 3414 MTLADFCDQQLR-KEEENASVIDSAELQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDV------RAELAKTPVNKKNIEKMYERMYAALGDPKAPGL---------------------GAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKM--LKKGGSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLG--HEKAPAFRDYVAVARGSKDHNIRA------QEPESG-LSEETQVKCLMDQATDPNILGRTWEGWEPWM 4128 The following BLAST results are available for this feature:
BLAST of TCONS_00002420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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