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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001942 ID=TCONS_00001942|Name=TCONS_00001942|organism=Clytia hemisphaerica|type=transcript|length=2462bpRun BLAST on NCBI transcript from alignment at sc0000012:581544..589063- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001942 ID=TCONS_00001942|Name=TCONS_00001942|organism=Clytia hemisphaerica|type=transcript|length=7520bp|location=Sequence derived from alignment at sc0000012:581544..589063- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001942 vs. Swiss-Prot (Human)
Match: ASCC2 (Activating signal cointegrator 1 complex subunit 2 OS=Homo sapiens GN=ASCC2 PE=1 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 9.719e-35 Identity = 86/280 (30.71%), Postives = 141/280 (50.36%), Query Frame = 3
Query: 90 PSMGGRDVEDRNFLTFTMPSNMQLEDKGEFSTWCERMIFIFEDLKWLLALPVNEFWNQVLHDTTLTSSLESFLQNSPRFYD--LKNIPETCKTALGRVSKLYLLVIQRMSLHDEDQNQPMPTEVFGDMIYENYIFDAAKLIDICAIFQRPNNDEMQTLLGTIMENVFACQPNYYNDLSSAFESIIVTISN------------------MEERLQPPKGGKPVNGREAVDMLMFLYDMTCSLSAFLNVFPKASSLLFRTDLISRLATIYETMVPMLMKLIE 869
P++ DR F+ + P + E + ER F+ DL WLLALP ++FW QV+ D TL L+S+L+ PR +D + + PE R+ + L RMS H E ++ + FG+++Y N++FD K++D+C +F + N+ +Q ++G N+F QP+YY+DL +I+ SN +EER + P+ E D++++L D +L AFL++FP A + D RLA+ YE +P + I+
Sbjct: 25 PALHPEQKADRYFVLYKPPPKDNIPALVE--EYLERATFVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQ-KRLHRSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKMIG----NIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPL--LELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIK 295 The following BLAST results are available for this feature:
BLAST of TCONS_00001942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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