TCONS_00001756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001756
Unique NameTCONS_00001756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001756 ID=TCONS_00001756|Name=TCONS_00001756|organism=Clytia hemisphaerica|type=transcript|length=1097bp
GTCATAACCTTTGTAAGGAATAACTATAAAATCTGCAAAATACCAGCTTA
CTTTAAATATTTCTGACGGGtaagaagggtgtcaaaattaaaaGAGATAA
GGTATGACAAATCTTTGCATTACAGCTGCAAGCTTTTTGCTTTCGAGCTT
ATTTGTTGTTCAATCATCACCAGTCCAATTAAATGGTGATCCATGTCAAC
GTGATGGACCAGAATATTGGTGCAGAAATCAACAAACAGCTACTGAATGC
GGCGTTCTGAATTTCTGCAAGAAAAGGGGATTCAACTCGGCTATCACAAA
CAATGTTGTAAAACCACTTCAATTCGAACTATATTTCGAATCATTATGTC
CAGACTGTCGCAACTTTTTCAAGGAGCAATTATGGCCAGCTTACCAGCAA
CTCTATGATACAGGAATCTTTGACATCACCCTCTACAGTTATGGCAATGC
CAACGAGAAAAAGGAAGGTGACAATTGGGTCTTCACTTGCCAGCATGGTG
CTGAAGAATGCCAGTTGAACCTTTTGGAGACATGTGTTTTGCATATGTTA
ACTCATCCAAAGCAATTCATGCCTTATATTAATTGCGTTGAGCTTGATCC
ATCATTGGCAAGAGCCAAGCACTGTGCAGACGAGATGCGAATTGAATGGC
AACCTATCTTTAAATGTTATAATGGAAGTGAAGGTAATTTCTTGGAACAC
CAAGTTGCAGTGAAAACCGATTCCTTGGAACCTAAACATACCTGGGTGCC
ATGGATTGTTCTTGATGGCGCTCACACGAAAGAGATTCAAGATGCAGCCA
CTACAAATCTATCAAAACTTCTATGTGAACAATATAAAGGCACAACACCA
GACACATGTAATGATATTATTAGATAaagaaatttaaagtttttttcatg
tAAAGGACTTACTTTTTATATTTAATCAATTTTGTTGTAAAGATTTTAAT
TAGCTCGCTGTTAACACCTCCGTCTCACTCCGGTGAAGCTATTTCCAACT
GAATATATCGCTATAGCGATATAAGTTCTATAGTGTTACAagctaaacaa
atccaatgcgaTGGTTTCGGAGCGCATTCTTTTATAttagattttaa
Run BLAST on NCBI

protein sequence of TCONS_00001756-protein

>TCONS_00001756-protein ID=TCONS_00001756-protein|Name=TCONS_00001756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MTNLCITAASFLLSSLFVVQSSPVQLNGDPCQRDGPEYWCRNQQTATECG
VLNFCKKRGFNSAITNNVVKPLQFELYFESLCPDCRNFFKEQLWPAYQQL
YDTGIFDITLYSYGNANEKKEGDNWVFTCQHGAEECQLNLLETCVLHMLT
HPKQFMPYINCVELDPSLARAKHCADEMRIEWQPIFKCYNGSEGNFLEHQ
VAVKTDSLEPKHTWVPWIVLDGAHTKEIQDAATTNLSKLLCEQYKGTTPD
TCNDIIR
Run BLAST on NCBI

transcript from alignment at sc0000011:1158571..1159667

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001756 ID=TCONS_00001756|Name=TCONS_00001756|organism=Clytia hemisphaerica|type=transcript|length=1097bp|location=Sequence derived from alignment at sc0000011:1158571..1159667 (Clytia hemisphaerica)
ttaaaatctaaTATAAAAGAATGCGCTCCGAAACCAtcgcattggatttg
tttagctTGTAACACTATAGAACTTATATCGCTATAGCGATATATTCAGT
TGGAAATAGCTTCACCGGAGTGAGACGGAGGTGTTAACAGCGAGCTAATT
AAAATCTTTACAACAAAATTGATTAAATATAAAAAGTAAGTCCTTTacat
gaaaaaaactttaaatttcttTATCTAATAATATCATTACATGTGTCTGG
TGTTGTGCCTTTATATTGTTCACATAGAAGTTTTGATAGATTTGTAGTGG
CTGCATCTTGAATCTCTTTCGTGTGAGCGCCATCAAGAACAATCCATGGC
ACCCAGGTATGTTTAGGTTCCAAGGAATCGGTTTTCACTGCAACTTGGTG
TTCCAAGAAATTACCTTCACTTCCATTATAACATTTAAAGATAGGTTGCC
ATTCAATTCGCATCTCGTCTGCACAGTGCTTGGCTCTTGCCAATGATGGA
TCAAGCTCAACGCAATTAATATAAGGCATGAATTGCTTTGGATGAGTTAA
CATATGCAAAACACATGTCTCCAAAAGGTTCAACTGGCATTCTTCAGCAC
CATGCTGGCAAGTGAAGACCCAATTGTCACCTTCCTTTTTCTCGTTGGCA
TTGCCATAACTGTAGAGGGTGATGTCAAAGATTCCTGTATCATAGAGTTG
CTGGTAAGCTGGCCATAATTGCTCCTTGAAAAAGTTGCGACAGTCTGGAC
ATAATGATTCGAAATATAGTTCGAATTGAAGTGGTTTTACAACATTGTTT
GTGATAGCCGAGTTGAATCCCCTTTTCTTGCAGAAATTCAGAACGCCGCA
TTCAGTAGCTGTTTGTTGATTTCTGCACCAATATTCTGGTCCATCACGTT
GACATGGATCACCATTTAATTGGACTGGTGATGATTGAACAACAAATAAG
CTCGAAAGCAAAAAGCTTGCAGCTGTAATGCAAAGATTTGTCATACCTTA
TCTCttttaattttgacacccttcttaCCCGTCAGAAATATTTAAAGTAA
GCTGGTATTTTGCAGATTTTATAGTTATTCCTTACAAAGGTTATGAC

Coding sequence (CDS) from alignment at sc0000011:1158571..1159667

>TCONS_00001756 ID=TCONS_00001756|Name=TCONS_00001756|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000011:1158571..1159667 (Clytia hemisphaerica)
tTATCTAATAATATCATTACATGTGTCTGGTGTTGTGCCTTTATATTGTT
CACATAGAAGTTTTGATAGATTTGTAGTGGCTGCATCTTGAATCTCTTTC
GTGTGAGCGCCATCAAGAACAATCCATGGCACCCAGGTATGTTTAGGTTC
CAAGGAATCGGTTTTCACTGCAACTTGGTGTTCCAAGAAATTACCTTCAC
TTCCATTATAACATTTAAAGATAGGTTGCCATTCAATTCGCATCTCGTCT
GCACAGTGCTTGGCTCTTGCCAATGATGGATCAAGCTCAACGCAATTAAT
ATAAGGCATGAATTGCTTTGGATGAGTTAACATATGCAAAACACATGTCT
CCAAAAGGTTCAACTGGCATTCTTCAGCACCATGCTGGCAAGTGAAGACC
CAATTGTCACCTTCCTTTTTCTCGTTGGCATTGCCATAACTGTAGAGGGT
GATGTCAAAGATTCCTGTATCATAGAGTTGCTGGTAAGCTGGCCATAATT
GCTCCTTGAAAAAGTTGCGACAGTCTGGACATAATGATTCGAAATATAGT
TCGAATTGAAGTGGTTTTACAACATTGTTTGTGATAGCCGAGTTGAATCC
CCTTTTCTTGCAGAAATTCAGAACGCCGCATTCAGTAGCTGTTTGTTGAT
TTCTGCACCAATATTCTGGTCCATCACGTTGACATGGATCACCATTTAAT
TGGACTGGTGATGATTGAACAACAAATAAGCTCGAAAGCAAAAAGCTTGC
AGCTGTAATGCAAAGATTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000941XLOC_000941Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001756-proteinTCONS_00001756-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001756-exon-sc0000011-1491911889:1158571..1159667TCONS_00001756-exon-sc0000011-1491911889:1158571..1159667Clytia hemisphaericaexon
TCONS_00001756-exon-sc0000011-1510915933:1158571..1159667TCONS_00001756-exon-sc0000011-1510915933:1158571..1159667Clytia hemisphaericaexon
TCONS_00001756-exon-sc0000011-1575043694:1158571..1159667TCONS_00001756-exon-sc0000011-1575043694:1158571..1159667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1158571..1159667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0799048	0.0389599	0	0.0885131	4.09473	3.19314	28.3536	33.0841	25.7217	36.6145	45.213	44.9411	11.9304	11.0101	28.1083	38.1987	9.83742	17.6761	1.78375	2.71097	5.6011	6.10465	11.2231	10.9531	18.5307	37.7852	3.61566	6.02195	75.2962	44.8181
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003119SAP_A
IPR004911Interferon-induced_GILT
Blast
[Close]
BLAST of TCONS_00001756 vs. Swiss-Prot (Human)
Match: GILT (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 8.140e-29
Identity = 65/179 (36.31%), Postives = 91/179 (50.84%), Query Frame = 2 
Query:  329 LYFESLCPDCRNFFKEQLWPAYQQLYDTGIFDITLYSYGNANEKKEGDNWVFTCQHGAEECQLNLLETCVLHMLTHPKQFMPYINCVELDPSLARAKHCADEMRIEWQP--IFKCYNGSEGNFLEHQVAVKTDSLEPKHTWVPWIVLDGAHTKEIQDAATTNLSKLLCEQYKGTTPDTC 859
            LY+E+LC  CR F   +L+P +  L    I ++TL  YGNA E+     W F CQHG EEC+ N +E CVL  L     F+  +   E +        C         P  I +C  G  G  L H  A +TD+L+P H +VPW+ ++G   K ++D   T L  L+C+ Y+G  PD C
Sbjct:   66 LYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNG---KPLED--QTQLLTLVCQLYQGKKPDVC 237
The following BLAST results are available for this feature:
BLAST of TCONS_00001756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GILT8.140e-2936.31Gamma-interferon-inducible lysosomal thiol reducta... [more]
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