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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000499 ID=TCONS_00000499|Name=TCONS_00000499|organism=Clytia hemisphaerica|type=transcript|length=9445bp protein sequence of TCONS_00000499-protein >TCONS_00000499-protein ID=TCONS_00000499-protein|Name=TCONS_00000499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2570bp MDNRSGGQGNPYDRPYYGDPNVLRQQIPGYANSPGIYPYSQQQQQDGFSGRun BLAST on NCBI transcript from alignment at sc0000002:1572459..1593587+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000499 ID=TCONS_00000499|Name=TCONS_00000499|organism=Clytia hemisphaerica|type=transcript|length=21129bp|location=Sequence derived from alignment at sc0000002:1572459..1593587+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1572459..1593587+ >TCONS_00000499 ID=TCONS_00000499|Name=TCONS_00000499|organism=Clytia hemisphaerica|type=CDS|length=215964bp|location=Sequence derived from alignment at sc0000002:1572459..1593587+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000499 vs. Swiss-Prot (Human)
Match: BAZ2B (Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3) HSP 1 Score: 259.61 bits (662), Expect = 6.944e-69 Identity = 183/503 (36.38%), Postives = 303/503 (60.24%), Query Frame = 2
Query: 4274 MLKKLERQAQMEASRIAKREKVQNMLAEKQKMKEQ----REHERVMKIENQKVEKEMKLQAIE----------------------NEKERKRLXXXXXXXXXXXXXXXELVMMKAYXXXXXXXXXXXXXXXXXXXXTLIRQRKLEQKRYERMISKELKKPIDDMALNDLKPLPELPRVTNINIPGKAYADILMVQEFVHAFGHVIDIDPEKEFPSMGELQSSLLCESGSDEAIFTACQALLFYALYDPG-VSGPYAKTSLGSDLTSIELNENNISEVLRLFILSRNEGKQHTLSDQLTKYPLEALSPSSKAAVLAFIVNELLCGKSVSREIDGSLENISNMRRDKWNLEGDIRKLKADLLSKQPKKAAS------DQQQNLKNNKGESKKRXXXXXXXXXXXGTTITTAKESNIDLNDTAEDTEA-------ENQPEMVNPTTLDQMEKKLRLMEKKHARYRKKLFDSSHTIRGINLGQDRYRRRYFVLPNAGGIYVEGLESG 5662
+L+KL++Q Q ++ AK+++ EK+K KEQ ++ E++ +I+ ++EKE++ Q I EKE +R Q V K E+E+R++ +++MKA EA+++AEE+ERLK++K+ EK L ++RKLEQ+R E ++KELKKP +DM L D KPLPELPR+ + + G ++D LMV +F+ FG V+ D + P++ LQ LL S + LL A+ DPG ++G AKT+LG L ++ +N +N+SE+L++F+ + Q L++ L +A +P+ KA+VLAF++NEL C KSV EID +++ +SN+RRDKW +EG +RKL+ K K+ S ++Q L K+R +++ DD+ + + D ++ ++ + E++ E +++++EK++ + K+ ++YR+KLFD+SH++R + GQDRYRRRY++LP GGI+VEG+ESG
Sbjct: 903 LLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFMEAH--CGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSGGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSVMFGQDRYRRRYWILPQCGGIFVEGMESG 1403 HSP 2 Score: 201.06 bits (510), Expect = 5.271e-51 Identity = 129/323 (39.94%), Postives = 167/323 (51.70%), Query Frame = 2
Query: 6278 PQEIPPEMQAGWWRITDPEQMQRLNKCAHARGMRERNLQKTVVRFQDYTNSSC-KVDHLAFSLLLPDEESESKDKVTEDDSSVATSTDTNKSIQDKW-YPQLAYASDXXXXXXXXXXXXXXFSASLQVKGWRLSQKISPALLLS------------------TSNDQAEYDPPEDKY--PIRIAASRLLALELGIERRY---MKPPFRTPDSLXXXXXXXXXXXXVKNPKATAQLEKWREAVSEAKSSAQLSMCITALFECVAWEKSIMKVFCILCRKSDNEERLLLCDACDRGCHTYCCKPKFDKIPDGDWFCQDCVLMASG 7171
P+ IP EMQ GWWRI DPE ++ L K H RG+RE+ LQK + + DY +C K +A L +EE ++VT D I + W + A D ++L +VE+LE +V SASLQVKGW + S L T D++ E K P+ IA +RL LE IERR + P R WR A+SEA+S+AQ+++CI L + +AWEKSIMKV+C +CRK DNEE LLLCD CD+GCHTYC +PK IPDGDWFC C+ ASG
Sbjct: 1707 PKPIPEEMQFGWWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACLKNKDVAIIELNENEE----NQVTRD-------------IVENWSVEEQAMEMDLSVLQQVEDLERRVASASLQVKGWMCPEPASEREDLVYFEHKSFTKLCKEHDGEFTGEDESSAHALERKSDNPLDIAVTRLADLERNIERRIEEDIAPGLRV----------------------------WRRALSEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASG 1984 HSP 3 Score: 135.961 bits (341), Expect = 2.732e-31 Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query: 7427 SKDMEPCRFILNEMENHESSWPFLVPVNMKQFPEYYKVIKHPMDFHTMKTKLRDYQYKSKEEFARDARLVFFNCKTYNEDESEVGCAGEAMRSFFEKRWT 7726
SKD+ C IL EME HE +WPFL+PVN+K P Y KVIK PMDF T++ KL QY + E FA D RLVF NC+T+NED+S++G AG MR +FEK+WT
Sbjct: 2063 SKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWT 2162 HSP 4 Score: 111.309 bits (277), Expect = 8.208e-24 Identity = 49/102 (48.04%), Postives = 74/102 (72.55%), Query Frame = 2
Query: 3707 KKRKVVDLDLIKAPLKFGWRRQTRLRPNNAGDGLRGDVYYYSPCGKKLRTYPELNSYIFRNDVVDVDLKNFSFSTKLRVGEFMQAKDGS---KFVTLTEEEI 4003
K+R+V D ++ PL++GW+R+TR+R N G L+G+V YY+PCGKKLR YPE+ Y+ RN ++D+ NFSFS K+RVG+F +A+DG ++ L EE++
Sbjct: 735 KRRRVTDERELRIPLEYGWQRETRIR--NFGGRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNFSFSAKIRVGDFYEARDGPQGMQWCLLKEEDV 834 The following BLAST results are available for this feature:
BLAST of TCONS_00000499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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