TCONS_00073624-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073624-protein
Unique NameTCONS_00073624-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1389

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073624-protein ID=TCONS_00073624-protein|Name=TCONS_00073624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1389bp
MKSIDDLKTMWMNECVIVFLVVQRITCGVTFGGPSGGQTTTVPAPAVYKK
LDCSDVYNMQKVGLYLSPLGDKRVGFTKKVQPNEYFSIFGDDTISCDVRV
IAIKSDYYLKVTTDKSFDIISSSLQELLQLDSNSRTSFVTDSNTVKPNDP
LILKKGLRHYASYTETHLTSIKYNTNKYKDVATPHLLVQTTPFTPNMELE
VYVGYKCEAVNPNQLKICWPTHPGDVQGTYQINKKCEGVVNGFNDTEIIE
TQSCNSTIGWTAWSNWHLSEEEGEDPMGSENITIWRNATSCMQQGDGMSN
ETDVDEYWCGAEIYHIRTVQKDEYRYSDYFWAGDGECQLYHPERQVMDHL
NNQEDPSPTCGNGFQVFIQTTCVKGPYSLTPESPDLCPPPGFHIVDCYIE
CPDQNDYGKSIEHDVEDLLVDELQSEHYNESSPLRMNMKWLPAYENTYTN
GLPQAKSPDQNFIELQIKLNQPVFFERIELKLQPMPIGYPYGQVTFTSSK
DSGRTWSNSSNVTYMSSGDTWVVFSPMEVKYLSDIKFHFDMQITDQTIFQ
VIALNIFKTKNWGNWSVWSNWTTCTNQDCLADNATWYRTRNCDNWRNDDI
ITINAKQCPGQFMEVAKCKCLDKFRWDEVNELEISQCEDFQTKGTSSLEP
PPPDCGHGVINIAPSRCRYEGGNTMEYEDEYPHLCGTKNIQSTPCVKPCN
GSYPCGEQALAETVRCSTPKYQLLPNDVIIENITFQNVFGPVIVNASLPL
EDSYPIGRTANFTKDKDWTFDLPAFSFNGTIRLDCRGVQQVATEVTVFFC
PAPYFNKTFGPWRDECGNSSRPVIYQCRNPLQEGDPVVHDAFCPFKTENI
TEDYGYTGTPCYGYSNWSEWSGCNESPYCGHTANQTRTRNCTIDGLVQPD
ETCLRSNFTWATNETQSCFNLRTRCFHPVTQWTDWSDCDRPCGTGNKIRT
RDCQGDIDDCKAYHFKEEKICNTDLCPINAVWTLWTDWTSCSGSCGTGSQ
IRTRFCSPQQHGGAACGEPVPEDYGEMIFKHVENRDCIHNASCPGFRMEE
GNCTHICHEQNLACNFLMKKNGSDIADAAGIPCEDYTDHEHLYEPAINED
GNCLGFNKVPVEFNCDANSPPGQKRLCDCVPSDELEFGEWSQFGECKVVH
TSDSLPATCGQATRMRFRKTVSADDTHTLFDMQQCDLPDCPIPGNWSTWT
GFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVRYEECGEPKKCPV
HGGWSSWSLYSECQGACQYEDIPISRSYIRTCDNPEPDYGGRKCAGDKFK
SEKCDLKPCQSVKADTVVQFYGERFSTELKDLNSQKAMDLKEKLEKGIRE
EYLSNHPQIAEDSDYIKVTVHSFSDGSGFEPKAITKKKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045720XLOC_045720Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073624TCONS_00073624Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 1254..1310
e-value: 0.88
score: 9.8
coord: 982..1044
e-value: 1.3E-11
score: 54.6
coord: 1196..1249
e-value: 1.3E-10
score: 51.3
coord: 864..926
e-value: 0.24
score: 14.8
coord: 929..977
e-value: 2.6E-11
score: 53.6
coord: 1137..1191
e-value: 0.04
score: 21.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 978..1044
e-value: 5.1E-9
score: 35.9
coord: 1127..1191
e-value: 0.0017
score: 18.3
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 1255..1309
e-value: 0.022
score: 14.9
coord: 931..976
e-value: 4.0E-6
score: 26.9
coord: 984..1022
e-value: 7.4E-7
score: 29.2
coord: 1197..1248
e-value: 2.6E-8
score: 33.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 561..622
e-value: 0.026
score: 14.3
coord: 1192..1248
e-value: 1.6E-12
score: 47.0
coord: 1250..1309
e-value: 2.3E-8
score: 33.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 927..977
score: 10.332
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1251..1310
score: 9.287
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 979..1191
score: 10.99
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1193..1249
score: 12.372
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1248..1309
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 928..976
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 979..1019
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1192..1242
NoneNo IPR availableGENE3D2.30.90.10coord: 928..975
e-value: 2.4E-7
score: 30.7
coord: 861..918
e-value: 0.0043
score: 17.1

Blast
[Close]
BLAST of TCONS_00073624-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 8.405e-30
Identity = 101/355 (28.45%), Postives = 151/355 (42.54%), Query Frame = 0 
Query:  975 LCPINAVWTLWTDWTSCSGSCGTGSQIRTRFCSPQQHGGAACGEPVPEDYG------EMIFKHVENRDCIHNASCPGFRMEEGNCTHICHEQN----LACNFLMKKNGSDIADAAGIPCEDYTDHEHLYEPAINEDGNCLGFNKVPVEFNCDANSPPGQKRLCDCVP-SDELEFGEWSQFGECKVVHTSDSLPATCGQATRMRFRKTVSA---------DDTHTLFDMQQCDLPDCPIPGNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVRYEECGEPKKCPVHGGWSSWSLYSECQGACQYEDIPISRSYIRTCDNPEPDYGGRKCAGDKFKSEKCDLKPC 1309
            +  ++  ++ W+ W +CS +CG G Q R+R C+          +P+P + G      ++  ++ +N+ C  + S   + + E  CT  C   N      CN    ++G       G PCE                GN +                  +  +C+  P      +  W  +G C           +CG+ T+ R R   +          D   T   MQ C+  +CPI G W+TW  +  C+V+CG G R  TR C +PVPQ GGRKCEG +V+ + C     CP HG WS WS +  C   C    +   R Y RTCDNP P  GGR C G   + ++C+   C
Sbjct: 4525 IVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCN----------QPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWE-ECTRSCGRGNQTRTRTCNNPSVQHG-------GRPCE----------------GNAV------------------EIIMCNIRPCPVHGAWSAWQPWGTCS---------ESCGKGTQTRARLCNNPPPAFGGSYCDGAET--QMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQM---RRY-RTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 2 Score: 83.9593 bits (206), Expect = 6.397e-16
Identity = 60/185 (32.43%), Postives = 83/185 (44.86%), Query Frame = 0 
Query:  863 GYSNWSEWSGCNESPYCGHTANQTRTRNCTIDGLVQPDETCLRSNFTWATNETQSCFNLRTRCFHPVTQWTDWSDCDRPCGTGNKIRTRDC-----QGDIDDCKAYHFKEEKICNTDLCPINAVWTLWTDWTSCSGSCGTGSQIRTRFCS--PQQHGGAACGEPVPEDYGEMIFKHVENRDC-IH 1039
            G+S WS W  C  S  CG    Q R+R C         + C  S+      E ++C N         ++W+ W +C R CG GN+ RTR C     Q     C+  +  E  +CN   CP++  W+ W  W +CS SCG G+Q R R C+  P   GG+ C      D  E   +    R+C IH
Sbjct: 4531 GFSQWSAWRAC--SVTCGK-GIQKRSRLCNQPLPANGGKPCQGSDL-----EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEG-NAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC------DGAETQMQVCNERNCPIH 4700
The following BLAST results are available for this feature:
BLAST of TCONS_00073624-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN18.405e-3028.45Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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