TCONS_00073349-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073349-protein
Unique NameTCONS_00073349-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073349-protein ID=TCONS_00073349-protein|Name=TCONS_00073349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=807bp
MPYLLNIRNPFGLSPHGAYPSQQNEEFSKISKSEAEARHQAVSTYLQMWA
SGQHNMPPEQIFSMFPGGRGGPPRGNHRTNHPQTPTDAIAIAVAAAKEPN
DRHPYAGRDGIYGIHPANAKWQSVMQDDSITMEKDSKVNSYYHNTQGNVH
DNYAKRPTPTKERNIIDEPFKPSESNHKYQNNNNNNNINRFFDRPAPHLD
PLKGREYAHPSHVYENKRRELDSKVFDTSRHPALSSTRDHSPHRYDPRYP
TSRDELNNRLSEPPHLRVETAEGLASGSALSPNRKRPRPGPIIIPPAVNN
RSIPTTISPSRHFAAFPKGIYTPPAMLSPRSIFFNPPFNAPRHHPNAPHT
PGRMQLSKRRSSSFNEPQPLNTSQQQLQLKQLEQQQIQQQQQSVVQQTPK
QTTPVSAEPSTVTPTNEEEINVTTVASDPTEPKINVGPEFQAVLPHVLNR
TEAQKDSHRASLMWSPLKEDEQKQKEVEAYLDMACSLVLYGGSNNKEYAL
HILQRTRGNVKEAVRLLLSRRHILRADDPNADYHYSGSVRWTAKERLAFR
QAYRSKGKIFMGIQKEVETKSVQQCVEFYYLWKAMHPESFRARTRMVEVE
SEQDDEEVPPTPTAAVAPLSTLREPVFECDYPECRARFVSRQALNGHIRV
HGGSFTKPSDTRRAKTKAADGSSPRPPGDGLPSPPKKKKVAAPDPSIIIT
NTSEGPQQQFQCKVCGRVFSKVKSRSAHMKTHVKRDENNKPIKSAKATAK
QKQKQLQQQQRQQQQQQQQLQQQFGEHSMPPYPPQPTHPGPPQPPSNLNP
MTVFAHA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045513XLOC_045513Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073349TCONS_00073349Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR000949ELM2_dom
IPR001005SANT/Myb
IPR017884SANT_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 370..392
NoneNo IPR availableCOILSCoilCoilcoord: 742..776
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 626..647
e-value: 0.039
score: 13.8
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 710..732
e-value: 0.0056
score: 17.0
NoneNo IPR availableGENE3D2.160.10.10coord: 586..791
e-value: 1.7E-16
score: 60.0
NoneNo IPR availableGENE3D1.10.10.60coord: 523..585
e-value: 2.2E-7
score: 30.2
NoneNo IPR availableGENE3D1.10.110.10coord: 15..426
e-value: 6.3E-6
score: 25.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 723..807
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..691
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..417
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 627..651
e-value: 0.017
score: 24.3
coord: 710..732
e-value: 0.0038
score: 26.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 629..651
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 712..732
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 627..656
score: 10.949
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 710..737
score: 11.302
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 631..651
coord: 705..732
IPR000949ELM2 domainSMARTSM01189ELM2_2coord: 434..488
e-value: 1.1E-13
score: 61.5
IPR000949ELM2 domainPFAMPF01448ELM2coord: 434..486
e-value: 1.5E-9
score: 38.4
IPR000949ELM2 domainPROSITEPS51156ELM2coord: 432..521
score: 22.125
IPR001005SANT/Myb domainSMARTSM00717santcoord: 537..585
e-value: 9.9E-6
score: 35.0
IPR017884SANT domainPROSITEPS51293SANTcoord: 536..587
score: 15.425
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 540..586

Blast
[Close]
BLAST of TCONS_00073349-protein vs. Swiss-Prot (Human)
Match: TREF1 (Transcriptional-regulating factor 1 OS=Homo sapiens GN=TRERF1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.349e-54
Identity = 129/362 (35.64%), Postives = 186/362 (51.38%), Query Frame = 0 
Query:  411 TVTPT-NEEEINVTTVASDPTEPKINVGPEFQAVLPHVLNRTEAQKDSHRASLMWSPLKEDEQK--QKEVEAYLDMACSLVLYGGSNNKEYALHILQRTRGNVKEAVRLLLSRRHILRADDPNADYHYSGSVRWTAKERLAFRQAYRSKGKIFMGIQKEVETKSVQQCVEFYYLWKAMHPESFRARTRMVEV--------------------------ESEQDDEEVPPTPTAAVA---------PLSTLREP--VFECDYPECRARFVSRQALNGHIRVHGGSFTKPSDTRRAKTKAADGSSPRPPGDGLPSPPKKKKVAAPDPSIIITNTSEGPQQQFQCKVCGRVFSKVKSRSAHMKTH 732
            TVTP   E+ ++V        EP+IN+G  FQA +P + + +   +D+H+A+L+W P  E E    Q+ VE  L++ CS  L GG  N E+ALH L   +G+V  A+ +LL R+ +     P A+YHY+GS +WT+ ER  F +A  +  K F+ +QK V++K+V QCVE+YY WK +     + RTR+ E+                           +++++ EVP +P              PL  L +P   F C+ P C A F SRQALNGH R+HGG+       +  K + A  S  + PG         K      PS   T+    P   F CK CG+VF K+KSR+AHMKTH
Sbjct:  765 TVTPGPGEQTVDV--------EPRINIGLRFQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEESEVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGT------NQVTKARGAIPSGKQKPGGTQSGYCSVKS----SPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTH 1108
The following BLAST results are available for this feature:
BLAST of TCONS_00073349-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TREF12.349e-5435.64Transcriptional-regulating factor 1 OS=Homo sapien... [more]
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