TCONS_00071982-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071982-protein
Unique Name	TCONS_00071982-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	623

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071982-protein ID=TCONS_00071982-protein|Name=TCONS_00071982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MYCCKVFQRQNPKILSSTLKTIVSSQKWSHHQSSLNDTIPKQTTRSKVTG
VADHFSGNAAVKLPKSASKTESNLEFEDFQKAFMGKSTREILRALMVYKL
CSFDFLVERNKVLIKISRTLLGKRGFDFLMKNSFYGHFVAGETQEEIKSY
LSLMKAYGVGAILDYAVEADIPQSTITDSSTTDKIHEEEDEINLENLEDK
FKVHMDFADRRENVISARTYFYEGEEKCDENMEVFLKCIDTTSNTSENGF
AAIKVTALGRPVLLLRLSQILNQTQVYFDLLAENKGNCITERSFAEDAFE
HGLKDLGVDMTSAEVKQVFDIIDTANDGKIDIHEWHSFLTPRLKLARLFR
AKPITKGEKGGEVLATLTDAELKEMENMTDRLLTVAQRAKDKNVRLMVDA
EQTYFQPAISRITLEAMRFFNRDKPIIFNTYQCYLKDTPAHLRIDMELAR
REGFKFACKLVRGAYMEQERARAEAHGYADPIHDNKENTHACYNDMLFMM
LEEVRDRGANVMAASHNEASVRHAIKTMQEFGIKRTDDNVFFGQLLGMCD
AITYALGGAGYSAYKYVPYGPVEDVIPYLSRRAMENKSVMLGVMKERQML
WNELARRARSRELGHNPWAHVTA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044690	XLOC_044690	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071982	TCONS_00071982	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029041	FAD-linked_oxidoreductase-like
IPR002872	Proline_DH_dom
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 372..392
IPR029041	FAD-linked oxidoreductase-like	GENE3D	3.20.20.220		coord: 60..616 e-value: 1.0E-144 score: 482.0
IPR029041	FAD-linked oxidoreductase-like	SUPERFAMILY	51730	FAD-linked oxidoreductase	coord: 371..617 coord: 141..171 coord: 224..266
IPR002872	Proline dehydrogenase domain	PFAM	PF01619	Pro_dh	coord: 221..589 e-value: 1.5E-82 score: 277.4
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 310..345 score: 11.808
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 274..350

Blast

[Close]

BLAST of TCONS_00071982-protein vs. Swiss-Prot (Human)
Match: PROD (Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH PE=1 SV=3)

HSP 1 Score: 466.848 bits (1200), Expect = 3.551e-158
Identity = 263/593 (44.35%), Postives = 365/593 (61.55%), Query Frame = 0

Query:   34 SLNDTIPKQTTRSKVTGVADH-FSGNAAVKLPKSASKTESNLEFEDF---QKAFMGKSTREILRALMVYKLCSFDFLVERNKVLIKISRTLLGKRGFDFLMKNSFYGHFVAGETQEEIKSYLSLMKAYGVGAILDYAVEADI-PQSTITDSSTTDKIHEEEDEINLENLEDKFKVHMDFADRRENVISARTYFYEGEEKCDENMEVFLKCIDTTSNTSENGFAAIKVTALGRPVLLLRLSQILNQTQVYFDLLAENKGNC---ITERSFAEDAFEHGLKDLGVDMTSAEVKQVFDIIDTANDGKIDIHEWHSFLTPRLKLARLFRAKPITKGEKGGEVLATLTDAELKEMENMTDRLLTVAQRAKDKNVRLMVDAEQTYFQPAISRITLEAMRFFNRDKPIIFNTYQCYLKDTPAHLRIDMELARREGFKFACKLVRGAYMEQERARAEAHGYADPIHDNKENTHACYNDMLFMMLEEVRDRG-ANVMAASHNEASVRHAIKTMQEFGIKRTDDNVFFGQLLGMCDAITYALGGAGYSAYKYVPYGPVEDVIPYLSRRAMENKSVMLGVMKERQMLWNELARRARSRELGHNP 617
            +L   IP+    S      +   +G AAV    SA+     +   DF   Q+A+  + T E+ R+L+V +LC++  L+ R++ L+ +SR LLG+R F+ LMK +FYGHFVAGE QE I+  L   +A+GV AILDY VE D+ P+        +     E D       + +++ H  F DRR  VISARTYFY  E KCD +ME FL+CI+ +   S++GF AIK+TALGRP  LL+ S++L + + +F  +A  +G       +        +  +  LG+  + AE++  F        G +D+ +W S +  R KL++     P  +  +   +L+  T+ E  +M  M  R+  +A++A +  VRLMVDAEQTYFQPAISR+TLE  R FN +KP+IFNTYQCYLKD   ++ +D+ELARREG+ F  KLVRGAY+ QERARA   GY DPI+   E T+A Y+  L  +LEE++    A VM ASHNE +VR A++ M+E G+   D  V+FGQLLGMCD I++ LG AGY  YKYVPYGPV +V+PYLSRRA+EN S+M G  +ERQ+LW EL RR R+  L H P
Sbjct:    9 ALRPCIPRFVQLSTAPASREQPAAGPAAVPGGGSATAVRPPVPAVDFGNAQEAYRSRRTWELARSLLVLRLCAWPALLARHEQLLYVSRKLLGQRLFNKLMKMTFYGHFVAGEDQESIQPLLRHYRAFGVSAILDYGVEEDLSPEEAEHKEMESCTSAAERDGSGTNKRDKQYQAHRAFGDRRNGVISARTYFYANEAKCDSHMETFLRCIEASGRVSDDGFIAIKLTALGRPQFLLQFSEVLAKWRCFFHQMAVEQGQAGLAAMDTKLEVAVLQESVAKLGI-ASRAEIEDWFTAETLGVSGTMDLLDWSSLIDSRTKLSKHL-VVPNAQTGQLEPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLEMQRKFNVEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAEIGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLHPADHQVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTHRERQLLWLELLRRLRTGNLFHRP 599

The following BLAST results are available for this feature:

BLAST of TCONS_00071982-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071982-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PROD	3.551e-158	44.35	Proline dehydrogenase 1, mitochondrial OS=Homo sap...	[more]

You are here

TCONS_00071982-protein (polypeptide) - C. hemisphaerica