forkhead FoxA transcription factor (polypeptide) - C. hemisphaerica

Overview
Nameforkhead FoxA transcription factor
Unique NameTCONS_00071818-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071818-protein ID=TCONS_00071818-protein|Name=forkhead FoxA transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MTIMDMTGTTTPLSHHDMVIQSSRHAVPGEYDIKPLVTAPPTIGEYTSVN
QMGSQPPPQTSLDSMSEGSPKSANSPMKPRNYQHAKPPYSYISLITMSIQ
NSASKMVTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFIKVPRS
PDKPGKGSFWTLHPDAGNMFENGCYLRRQKRFKSDRKGNPIPHSSRGQDD
MSPYAKYSQSIQMGNSPRGGSSGPVGVPAFLPGTYGAYRGLHSFNHPFAI
KNIINAPEHEGDFRYADPMHFPYHPSTFTAPLPYGAPAGKEGLSIPPTST
ESFNLNTSLMNQYYQNSCMVPNNTGLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044586XLOC_044586Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071818TCONS_00071818Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 86..99
score: 71.94
coord: 130..147
score: 76.81
coord: 107..124
score: 61.86
IPR001766Fork head domainSMARTSM00339forkneu4coord: 84..174
e-value: 1.7E-59
score: 213.6
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 86..170
e-value: 1.4E-36
score: 124.6
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 86..180
score: 38.892
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 69..173
e-value: 2.0E-38
score: 130.1
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 85..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..203
NoneNo IPR availableCDDcd00059FHcoord: 86..163
e-value: 1.90788E-48
score: 158.101
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 130..136

Blast
[Close]
BLAST of forkhead FoxA transcription factor vs. Swiss-Prot (Human)
Match: FOXA2 (Hepatocyte nuclear factor 3-beta OS=Homo sapiens GN=FOXA2 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.302e-66
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0 
Query:   80 RNYQHAKPPYSYISLITMSIQNSASKMVTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFIKVPRSPDKPGKGSFWTLHPDAGNMFENGCYLRRQKRFKSDRK 187
            R+Y HAKPPYSYISLITM+IQ S +KM+TLSEIYQ+IMDLFP+YRQNQQRWQNSIRHSLSFNDCF+KVPRSPDKPGKGSFWTLHPD+GNMFENGCYLRRQKRFK +++
Sbjct:  153 RSYTHAKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQ 260
The following BLAST results are available for this feature:
BLAST of forkhead FoxA transcription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXA23.302e-6686.11Hepatocyte nuclear factor 3-beta OS=Homo sapiens G... [more]
back to top