TCONS_00071815-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071815-protein
Unique NameTCONS_00071815-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071815-protein ID=TCONS_00071815-protein|Name=TCONS_00071815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MMRSGSSNSNNVQQNSTTSSQHHHLQQHQQQHQQRKEHGNPSQQTIQLLK
KQNAQMRQQISEQDQRELTLMETIRQLQATVENQNKRFEEFRSDVMEEFK
SLKEQFSKVTLIEGASCPPSNPSRAPSPAPSESKQEADEDECMSPPTSPQ
PQENAESANNTVAVSKRNLFSLIKENRKYIDQLDLRLQLQDNTYYNGRIL
WRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLG
THLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSS
ASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVEQG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044583XLOC_044583Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071815TCONS_00071815Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availableCOILSCoilCoilcoord: 46..66
NoneNo IPR availableGENE3D1.20.5.50coord: 6..141
e-value: 5.6E-5
score: 22.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 201..325
e-value: 4.2E-7
score: 39.6
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 196..342
score: 17.706
IPR008974TRAF-likeGENE3D2.60.210.10coord: 176..344
e-value: 3.0E-32
score: 111.3
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 195..342

Blast
[Close]
BLAST of TCONS_00071815-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 8.905e-48
Identity = 75/161 (46.58%), Postives = 107/161 (66.46%), Query Frame = 0 
Query:  183 LDLRLQLQDNTYYNGRILWRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLGTHLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSSASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVE 343
            +DLR Q+ +   YNG ++W+I  +K R+++ + G   +L+S P YT    GYK C R+Y NGDG G GTHLS+F VIM+ EYD LL WPF   V   L++Q +  + L +   P+ +S+SF+KPT EMN+ASGCP+F  Q  LE   Y+ DDT+F++V V+
Sbjct:  402 MDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYT-GYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00071815-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF38.905e-4846.58TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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