TCONS_00071652-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071652-protein
Unique NameTCONS_00071652-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071652-protein ID=TCONS_00071652-protein|Name=TCONS_00071652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MGAGAGKEQDGNKKQKITKKDLKFFLKEIKEHTAGINSMTLTPDGSMLVS
ASEDANAHILDTTSEQTVSVLKGHEKYINSVVCNNDFVFTASADKMIRKW
RIDTGMCSKTMRGHTCAVNRLMLVDSLLFSSSYDRSARCWHIDTGECLAV
FNGHKLGVYPLLYIPQSDDSFERDITDLNNNHDILITGSADTTAKSWALN
TNEVLLTYKGHNGAVLSMACDNSGKYLFTGSQDSTIRSYVLSTGKPVNVF
SGHAASVLQLQVVNRLLFSSSADHTVRCWVYEFGECTRVYRGHTHTVGCM
KVAKGLLLTGSGDDTAKIFDAKSGTNKRTFRGHIGSVNALVLHKHKLYTG
SNDGAIRIWDASGIGEDDDDDDEEEDSGVVPMQQEQQTPQSQSPAPSNDD
AAPINDENAQPVNE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044519XLOC_044519Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071652TCONS_00071652Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 185..199
score: 37.38
coord: 128..142
score: 31.86
coord: 347..361
score: 35.95
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 104..141
e-value: 0.0075
score: 25.5
coord: 64..101
e-value: 2.1E-4
score: 30.6
coord: 22..61
e-value: 8.8E-4
score: 28.6
coord: 144..198
e-value: 0.5
score: 18.9
coord: 323..360
e-value: 2.4E-6
score: 37.1
coord: 283..320
e-value: 5.8E-4
score: 29.2
coord: 243..280
e-value: 0.0022
score: 27.2
coord: 201..240
e-value: 1.5E-6
score: 37.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 284..320
e-value: 0.018
score: 15.8
coord: 325..360
e-value: 4.1E-5
score: 24.1
coord: 204..237
e-value: 1.6E-4
score: 22.3
coord: 106..140
e-value: 0.25
score: 12.2
coord: 66..100
e-value: 0.024
score: 15.4
coord: 244..279
e-value: 0.0023
score: 18.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 71..110
score: 10.308
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 29..70
score: 11.21
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 111..150
score: 9.205
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 330..360
score: 11.745
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 290..329
score: 8.838
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 208..249
score: 11.177
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 250..289
score: 8.503
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 16..95
e-value: 8.3E-18
score: 64.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 304..364
e-value: 1.0E-15
score: 57.2
NoneNo IPR availableGENE3D2.80.10.50coord: 277..303
e-value: 4.3E-8
score: 32.8
NoneNo IPR availableGENE3D2.80.10.50coord: 96..168
e-value: 7.2E-18
score: 64.1
NoneNo IPR availableGENE3D2.40.50.140coord: 242..276
e-value: 1.0E-11
score: 43.8
coord: 169..241
e-value: 9.9E-15
score: 53.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..414
NoneNo IPR availableCDDcd00200WD40coord: 26..320
e-value: 1.11798E-63
score: 207.187
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 206..363
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 347..361
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 29..369
score: 54.918
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 26..258

Blast
[Close]
BLAST of TCONS_00071652-protein vs. Swiss-Prot (Human)
Match: WDR86 (WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3)

HSP 1 Score: 285.419 bits (729), Expect = 2.214e-93
Identity = 144/344 (41.86%), Postives = 205/344 (59.59%), Query Frame = 0 
Query:   26 LKEIKEHTAGINSMTLTPDGSMLVSASEDANAHILDTTSEQTVSVLKGHEKYINSVVCNNDFVFTASADKMIRKWRIDTGMCSKTMRGHTCAVNRLMLVDSLLFSSSYDRSARCWHIDTGECLAVFNGHKLGVYPLLY-----IPQSDDSFERDITDLNNNHDILITGSADTTAKSWALNTNEVLLTYKGHNGAVLSMACDNSGKYLFTGSQDSTIRSYVLSTGKPVNVFSGHAASVLQLQVVNRLLFSSSADHTVRCWVYEFGECTRVYRGHTHTVGCMKVAKGLLLTGSGDDTAKIFDAKSGTNKRTFRGHIGSVNALVLHKHKLYTGSNDGAIRIWDASGI 364
            L+   +H  GIN ++L+PDG  L++ SED  A +  T   Q  ++L+GHE Y+      ++  FT SAD  IR+W + TG C +  RGHT  VNR+++ ++ LFSSSYDR+AR W +D G+    F GH+  V  L Y     +P +  + E     L      L+TGS D TAK W + +     T +GH GAVL +  D  G   FTGS D+TIR++ + +G+ + VF  H  SV+ L++VNRL++S SAD TV+CW+ + GEC R +  H   V  +K   G L TGSGD  A+ FDA+SG  +R FRGH   +N + +H   LYT S+DGA+R+WD  G+
Sbjct:    8 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGL------LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSGSADRTVKCWLADTGECVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVHGQVLYTASHDGALRLWDVRGL 345
The following BLAST results are available for this feature:
BLAST of TCONS_00071652-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR862.214e-9341.86WD repeat-containing protein 86 OS=Homo sapiens GN... [more]
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