TCONS_00071367-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071367-protein
Unique Name	TCONS_00071367-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	362

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071367-protein ID=TCONS_00071367-protein|Name=TCONS_00071367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MKCFVIFNSLPDISYLWMDKEFRSHIINKGISLINPEMKASDVDEETILS
LVVQFFNPMVNSNKYMREVNNAYQTMKCDNGFIFVMNQLTELSLFCIAVC
GDGQESELFLQRKINFFHRMLIFSYGPCAVDHLRPPFPDKRRKAWKELDR
WLSSWTTLCQQEQMYLVEALERLHVNHQLNSISLNLLGEILAKSNRDSTM
HTLLLVNNKVLGLYSNQRSLELQSADILLLIVLINKSFQYVDELVPKSIY
RTPEPLVTTVQQCTDELLFKRPPKETKSSSTERDSSASPANFEYHSAPST
PVEDHGFKEGFFTPRNSTVFTPIQHSEEIPRHRRSSSSSLQDRFSTPSVS
MDGDRRGIDYDL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044349	XLOC_044349	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071367	TCONS_00071367	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004353	Mon1

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004353	Vacuolar fusion protein Mon1	PFAM	PF03164	Mon1	coord: 68..239 e-value: 1.0E-4 score: 21.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..362

Blast

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BLAST of TCONS_00071367-protein vs. Swiss-Prot (Human)
Match: HPS1 (Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.805e-21
Identity = 90/339 (26.55%), Postives = 160/339 (47.20%), Query Frame = 0

Query:    1 MKCFVIFNSLPDISYLWMDKEFRSHIINKGISLINPEMKASDVDEE--TILSLVVQFFNPMVNSNKYMREVNNAYQTMKCDNG-FIFVMNQLTELSLFCIAVCGDGQESELFLQRKINFFHRMLIFSYGPCAVD------HLRPPFPDKRRKAWKELDRWLSSWTTLCQQEQMYLVEALERLHVNHQLNSISLNLLGEILAKS-------NRDSTMHTLLLVNNKVLGLYSNQRSLELQSADILLLIVLINKSF---QYVDELVPKSIYRTPEPLVTTVQQCTDELLFKRPPKETKSSSTERDSSASPANFEYHSAPSTPVEDHG---FKEGFFTPRNS 317
            MKC ++     ++ + W D+EF   +  K     N E +   ++++  T+L+ V+      ++S   + ++++ Y     +NG F++V++   E  LF IA+ GD  ESE  L+RK+     +    +G   VD       LRPP   +R + W+     L +++ L +QEQ + VEALERL ++ QL  + +  L   + ++         +  +H  LLV++K+L  YS+  +  L+ AD+L LI+L+   +      ++ +  S  R        VQQ          P    S+ TE DS + P  + +  APS   +  G   + EG   P ++
Sbjct:    1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVI------ISSMTMLEKLSDTYTCFSTENGNFLYVLHLFGE-CLF-IAINGDHTESEGDLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERL-IHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSP--HSTGPTGGSSAETETDSFSLPEEY-FTPAPSPGDQSSGSTIWLEGGTPPMDA 327

The following BLAST results are available for this feature:

BLAST of TCONS_00071367-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071367-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HPS1	4.805e-21	26.55	Hermansky-Pudlak syndrome 1 protein OS=Homo sapien...	[more]

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TCONS_00071367-protein (polypeptide) - C. hemisphaerica