TCONS_00071342-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071342-protein
Unique NameTCONS_00071342-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071342-protein ID=TCONS_00071342-protein|Name=TCONS_00071342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MPKNKGKGGKNRRRGKNENETEKRELVFKEEGQEYAQVLKMLGNGRLDAM
CFDGTKRLCHIRGKLRKKVWINTGDIILLGLRDYQDNKADVILKYTPDEA
RNLKTYGELPDNVKIESNINNEDASGDIEFEFQDDSEEEDDDLDDIDNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044335XLOC_044335Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071342TCONS_00071342Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 28..110
e-value: 2.1E-49
score: 180.2
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMTIGR00523TIGR00523coord: 14..110
e-value: 8.4E-36
score: 119.9
IPR001253Translation initiation factor 1A (eIF-1A)PRODOMPD005579coord: 53..109
e-value: 2.0E-22
score: 257.0
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 16..110
score: 19.3
NoneNo IPR availableGENE3D2.40.50.140coord: 2..143
e-value: 1.2E-62
score: 209.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd05793S1_IF1Acoord: 33..109
e-value: 3.4112E-44
score: 141.122
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 32..93
e-value: 1.2E-20
score: 72.9
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 22..96
score: 32.581
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 41..63
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..142

Blast
[Close]
BLAST of TCONS_00071342-protein vs. Swiss-Prot (Human)
Match: IF1AX (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 2.808e-72
Identity = 101/115 (87.83%), Postives = 109/115 (94.78%), Query Frame = 0 
Query:    1 MPKNKGKGGKNRRRGKNENETEKRELVFKEEGQEYAQVLKMLGNGRLDAMCFDGTKRLCHIRGKLRKKVWINTGDIILLGLRDYQDNKADVILKYTPDEARNLKTYGELPDNVKI 115
            MPKNKGKGGKNRRRGKNENE+EKRELVFKE+GQEYAQV+KMLGNGRL+AMCFDG KRLCHIRGKLRKKVWINT DIIL+GLRDYQDNKADVILKY  DEAR+LK YGELP++ KI
Sbjct:    1 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKI 115
The following BLAST results are available for this feature:
BLAST of TCONS_00071342-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1AX2.808e-7287.83Eukaryotic translation initiation factor 1A, X-chr... [more]
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