TCONS_00071249-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071249-protein
Unique NameTCONS_00071249-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071249-protein ID=TCONS_00071249-protein|Name=TCONS_00071249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MPRGPKKHLKRLNAPRHWMLDKLSGNFAPRPSSGPHKLRESLPLIVFLRN
RLKYALNYTEVVKIMMQRTIQVDGKVRTDVTYPAGFMDVITIERTGEFFR
LLFDVKGRFVCHRISQEESAYKLGKVKRVAVGKNTVPYLVTHDARTIRYP
DPDIKVNDTVVIDIKTGKITDSIKFDTGNTVMVIGGRNTGRVGIITNRER
HASSYDIVHIKDAAGHTFATRLSNIFIVGKGNKAMVTLPKGKGVRLSIAE
ERDRRLAHK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044288XLOC_044288Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071249TCONS_00071249Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR002942S4_RNA-bd
IPR013843Ribosomal_S4e_N
IPR000876Ribosomal_S4e
IPR014722Rib_L2_dom2
IPR013845Ribosomal_S4e_central_region
IPR03227740S_S4_C
IPR018199Ribosomal_S4e_N_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 174..201
e-value: 0.0031
score: 26.8
IPR005824KOWPFAMPF00467KOWcoord: 178..211
e-value: 2.8E-6
score: 27.0
IPR002942RNA-binding S4 domainGENE3D3.10.290.10coord: 35..120
e-value: 7.3E-21
score: 73.2
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 43..90
e-value: 6.3E-5
score: 22.5
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 42..104
score: 8.571
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 3..39
e-value: 1.3E-20
score: 73.1
IPR000876Ribosomal protein S4ePIRSFPIRSF002116RPS4a_RPS4ecoord: 1..241
e-value: 1.9E-94
score: 312.7
IPR000876Ribosomal protein S4eHAMAPMF_00485Ribosomal_S4ecoord: 7..238
score: 34.868
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 170..205
e-value: 0.0032
score: 17.1
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 95..169
e-value: 3.7E-33
score: 113.2
IPR013845Ribosomal protein S4e, central regionPRODOMPD002667coord: 87..178
e-value: 8.0E-34
score: 360.0
IPR03227740S ribosomal protein S4, C-terminal domainPFAMPF1612140S_S4_Ccoord: 212..259
e-value: 3.1E-27
score: 93.8
IPR018199Ribosomal protein S4e, N-terminal, conserved sitePROSITEPS00528RIBOSOMAL_S4Ecoord: 8..22
NoneNo IPR availableCDDcd06087KOW_RPS4coord: 175..229
e-value: 3.91871E-26
score: 96.8159

Blast
[Close]
BLAST of TCONS_00071249-protein vs. Swiss-Prot (Human)
Match: RS4X (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 9.790e-143
Identity = 186/259 (71.81%), Postives = 224/259 (86.49%), Query Frame = 0 
Query:    1 MPRGPKKHLKRLNAPRHWMLDKLSGNFAPRPSSGPHKLRESLPLIVFLRNRLKYALNYTEVVKIMMQRTIQVDGKVRTDVTYPAGFMDVITIERTGEFFRLLFDVKGRFVCHRISQEESAYKLGKVKRVAVGKNTVPYLVTHDARTIRYPDPDIKVNDTVVIDIKTGKITDSIKFDTGNTVMVIGGRNTGRVGIITNRERHASSYDIVHIKDAAGHTFATRLSNIFIVGKGNKAMVTLPKGKGVRLSIAEERDRRLAHK 259
            M RGPKKHLKR+ AP+HWMLDKL+G FAPRPS+GPHKLRE LPLI+FLRNRLKYAL   EV KI MQR I++DGKVRTD+TYPAGFMDVI+I++TGE FRL++D KGRF  HRI+ EE+ YKL KV+++ VG   +P+LVTHDARTIRYPDP IKVNDT+ ID++TGKITD IKFDTGN  MV GG N GR+G+ITNRERH  S+D+VH+KDA G++FATRLSNIF++GKGNK  ++LP+GKG+RL+IAEERD+RLA K
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAK 259
The following BLAST results are available for this feature:
BLAST of TCONS_00071249-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS4X9.790e-14371.8140S ribosomal protein S4, X isoform OS=Homo sapien... [more]
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