TCONS_00071217-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071217-protein
Unique NameTCONS_00071217-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071217-protein ID=TCONS_00071217-protein|Name=TCONS_00071217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MYCKLDETEMTPNNFSMNTILTSEKQKMADEHHEELKLQHLQMAQQQAAQ
HQPLMSLQPPQGQMAPQHPQQQQPKYTTDCNDNEEILQAPPPQKKLKNYE
DELPKKEXPPPQKKQKNYEDELPKKEELSSEAKHVHVHLEDSELWKKFKS
LTNEMIVTKNGRRMFPVLKLNIRGLEPNAMYSILLDFVAVEDHRWKYVNG
EWVAGGKPEPATTSSVYIHPDSPNFGNHWMKNSVAFTKVKLTNKMNGEGQ
VMLNSLHKYQPRIHVIRVGAPEGERTISTHTFPETQFIAVTAYQNEEITH
LKIQYNPFAKAFLDAKERSDQKDMLYERDALNQIASNYGYYPSMMSPVTR
GIGCDNLRNHRASPYPSPYQRPDLLSGCQPPYYRESSPPFMSNQCIQNNT
WPLHHLNYNSAMTSAQLKPDDVINQTMSGTTFTASTFGQFPTTKATGVDP
NANPWAHSLAYSTNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044272XLOC_044272Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071217TCONS_00071217Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR002070TF_Brachyury
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001699Transcription factor, T-boxPRINTSPR00937TBOXcoord: 152..176
score: 62.17
coord: 252..266
score: 67.1
coord: 217..230
score: 70.81
coord: 306..314
score: 79.47
coord: 234..243
score: 68.48
coord: 285..298
score: 80.12
IPR001699Transcription factor, T-boxSMARTSM00425tbox5coord: 134..319
e-value: 1.2E-107
score: 373.6
IPR001699Transcription factor, T-boxGENE3D2.60.40.820coord: 131..320
e-value: 9.0E-83
score: 276.2
IPR001699Transcription factor, T-boxPFAMPF00907T-boxcoord: 137..314
e-value: 8.6E-74
score: 247.6
IPR001699Transcription factor, T-boxPROSITEPS50252TBOX_3coord: 139..314
score: 73.025
IPR001699Transcription factor, T-boxCDDcd00182TBOXcoord: 135..318
e-value: 5.95569E-104
score: 309.518
IPR002070Transcription factor, BrachyuryPRINTSPR00938BRACHYURYcoord: 351..366
score: 51.7
coord: 257..274
score: 57.07
coord: 310..320
score: 91.74
coord: 197..217
score: 73.59
IPR018186Transcription factor, T-box, conserved sitePROSITEPS01264TBOX_2coord: 218..236
IPR018186Transcription factor, T-box, conserved sitePROSITEPS01283TBOX_1coord: 144..163
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 135..317

Blast
[Close]
BLAST of TCONS_00071217-protein vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 2.729e-113
Identity = 172/280 (61.43%), Postives = 204/280 (72.86%), Query Frame = 0 
Query:  133 KHVHVHLEDSELWKKFKSLTNEMIVTKNGRRMFPVLKLNIRGLEPNAMYSILLDFVAVEDHRWKYVNGEWVAGGKPEPATTSSVYIHPDSPNFGNHWMKNSVAFTKVKLTNKMNGEGQVMLNSLHKYQPRIHVIRVGAPEGERTISTHTFPETQFIAVTAYQNEEITHLKIQYNPFAKAFLDAKERSDQKDMLYE-RDALNQIASNYGYY---------PSMMSPVTRGI-------GCD---NLRNHRASPYPSPYQRPDLLSGCQPPYYRESSPPFMS 392
            + + V LE+SELW +FK LTNEMIVTKNGRRMFPVLK+N+ GL+PNAMYS LLDFVA ++HRWKYVNGEWV GGKPEP   S VYIHPDSPNFG HWMK  V+F+KVKLTNK+NG GQ+MLNSLHKY+PRIH++RVG P  +R I++H FPETQFIAVTAYQNEEIT LKI+YNPFAKAFLDAKERSD K+M+ E  D+     S +G+          P+   P   G         CD    LR+HR+SPYPSPY   +       P Y ++SP  +S
Sbjct:   40 RELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGP--QRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHKEMMEEPGDSQQPGYSQWGWLLPGTSTLCPPANPHPQFGGALSLPSTHSCDRYPTLRSHRSSPYPSPYAHRN-----NSPTYSDNSPACLS 312
The following BLAST results are available for this feature:
BLAST of TCONS_00071217-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAC2.729e-11361.43Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1[more]
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