TCONS_00071184-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071184-protein
Unique NameTCONS_00071184-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071184-protein ID=TCONS_00071184-protein|Name=TCONS_00071184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MRDDRRPLWEDEANIKGGYWKMRCPKNKTPLVWKELLLALIGEQFKDLIS
EADMIVGASVSIRDRDDILQIWNNRSVEASDAKVIKKLGELVPGLDVSGA
FYKAHQAHENFESGGSRKSSAQTGTSPFNFKHSPIHSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044240XLOC_044240Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071184TCONS_00071184Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023398TIF_eIF4e-like
IPR001040TIF_eIF_4E
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023398Translation Initiation factor eIF- 4e-likeGENE3D3.30.760.10coord: 1..118
e-value: 4.4E-29
score: 100.8
IPR023398Translation Initiation factor eIF- 4e-likeSUPERFAMILY55418eIF4e-likecoord: 1..113
IPR001040Translation Initiation factor eIF- 4ePFAMPF01652IF4Ecoord: 1..88
e-value: 2.2E-21
score: 76.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..138

Blast
[Close]
BLAST of TCONS_00071184-protein vs. Swiss-Prot (Human)
Match: IF4E3 (Eukaryotic translation initiation factor 4E type 3 OS=Homo sapiens GN=EIF4E3 PE=2 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 4.027e-41
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 0 
Query:    1 MRDDRRPLWEDEANIKGGYWKMRCPKNKTPLVWKELLLALIGEQFKDLISEADMIVGASVSIRDRDDILQIWNNRSVEASDAKVIKKLGELVPGLDVSGAFYKAHQAHENFESG 114
            MR +RRPLWE+E+N KGG WKM+ PK+ T  VWKELLLA IGEQF D  +  D ++G SVS+RDR+D++Q+WN  +    +A V++K+ EL+P +     FYK H+ H  FE G
Sbjct:  107 MRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDREDVVQVWNVNASLVGEATVLEKIYELLPHITFKAVFYKPHEEHHAFEGG 220
The following BLAST results are available for this feature:
BLAST of TCONS_00071184-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF4E34.027e-4151.75Eukaryotic translation initiation factor 4E type 3... [more]
back to top