TCONS_00071004-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071004-protein
Unique NameTCONS_00071004-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071004-protein ID=TCONS_00071004-protein|Name=TCONS_00071004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MSRWRSTCPDKLLTSIANISEARLYLLRQTGPTGFLLKEHDGETKFKVLL
GAVHSCDCNFFLKERELCKHILWILIRKFRIQKEDPIAFQLGLCERELNH
VLYGQKQVENKQPTKAASAGAREMLKQKKIEKEDVCPICQDEIYKTKKSL
TYCKFGCGNSVHVSCLKIWADHQHKSNNEEVIKCPLCRTEFASYKSILQE
HRRSVTRSQMRKNSLLSICVGCKQRAPSTSSTQSVYKCNTCNSFLCQSCF
HPNKHYGHQVKTKHGGGEKWEDLGYKEVNLCIGGFSSSMTSSHGKQFPSS
PSAPVRPKQKLSRLRSSSQTDVRDLAISGLSLNSEKLELNYKPVSEQRSS
NASTARFRLPPIGKTRGLIGMSGKHRSKSGTGNQTEERKEVDFTLYSSPL
NSRTENLR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044125XLOC_044125Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071004TCONS_00071004Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 46..77
e-value: 4.0E-4
score: 19.9
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 46..79
score: 9.099
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 135..188
e-value: 1.4E-6
score: 28.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 136..188
score: 10.527
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 136..191
e-value: 4.07546E-4
score: 37.04
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 215..274
e-value: 0.022
score: 14.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 118..214
e-value: 8.3E-12
score: 44.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 362..408
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 126..197

Blast
[Close]
BLAST of TCONS_00071004-protein vs. Swiss-Prot (Human)
Match: ZSWM2 (E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 4.139e-55
Identity = 109/260 (41.92%), Postives = 152/260 (58.46%), Query Frame = 0 
Query:   24 LYLLRQTGPTGFLLKEHDGE-TKFKVLLGAVHSCDCNFFLKERELCKHILWILIRKFRIQKEDPIAFQLGLCERELNHVLYGQKQVENKQP-TKAASAGARE--MLKQKKIEKEDVCPICQDEIYKTKKSLTYCKFGCGNSVHVSCLKIWADHQHKSNNEEVIKCPLCRTEFASYKSILQEHRRS----VTRSQMRKNSLLSI-CVGCKQRAPSTSSTQSVYKCNTCNSF-LCQSCFHPNKHYGHQVKTKHGGGEKWEDL 273
            +YLLR+ GPTGFLL+E + E   F+V LG  H C+C+ F K  ELCKHI W+L++KF++ +    A QLGL ERE++ +L G  +V+  QP T   +    E   +KQK+I+ ED+C ICQ+ + + K  +T+C+FGCGNS+H+ C+KI A++Q  SN   ++KCPLCR EFA  K IL+E + S        + R +  L I C  CKQ           YKC  C  + LCQ CF    H  H    +    +KW  L
Sbjct:   31 IYLLREMGPTGFLLREEEPEYMDFRVFLGNPHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQPGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILANYQSTSNT-SMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQ----FPIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSL 285
The following BLAST results are available for this feature:
BLAST of TCONS_00071004-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZSWM24.139e-5541.92E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens... [more]
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