TCONS_00070982-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070982-protein
Unique NameTCONS_00070982-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070982-protein ID=TCONS_00070982-protein|Name=TCONS_00070982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp
MDKEKSNGSQSGKNKPRRLRIKRSSTKENNRTSQTQEESSPPPYQSKLQS
LFAQIEKEFQKLHHQNQELHEKVDILTEKYEQLVANGVDKSDSKIPTYND
SYAGLDTNDFYSKGNKKQSASSLMSQKLKTRYKASTSKLVSSFKIPNSQG
GNVFCHMVQKYAGHKDGIWDLDSQKTNSFLIGTASADRTAKLWNAETGQC
LITYMAHNGSVNSIRFHPTEPLACTGSGDGNAHIWKIPPLSDVRSRSPQG
NSDSPAGSGEDDLEDEGEGTDNQQIMKIKHSSVEFSQHEGPIAVADWWEN
GSQIVTASWDRTVKLWDVEKATAFYTMEGHELEITHASTHSSHKLIVTSS
QDTTFRLWDFRQPYMHSVNVFQGHTDTVTSAVFTTKADHVVSGSDDRTVK
VWDLKNMRSPLTTIRLDSAINRLSLSPAQNIIAIPHDNRHVRLYDLAGNR
MSRLPRRHRQGHRRIVCATCWHDDTNTNKPVNLLTAGFDKQILGWKVGF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044116XLOC_044116Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070982TCONS_00070982Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR0110426-blade_b-propeller_TolB-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..86
NoneNo IPR availableGENE3D1.10.10.670coord: 315..355
e-value: 9.0E-15
score: 53.9
coord: 356..403
e-value: 5.1E-15
score: 54.7
NoneNo IPR availableGENE3D2.40.10.120coord: 272..314
e-value: 4.0E-4
score: 19.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..270
NoneNo IPR availableCDDcd00200WD40coord: 163..496
e-value: 7.68726E-49
score: 169.823
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 390..404
score: 42.05
coord: 346..360
score: 37.03
coord: 304..318
score: 38.92
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 452..496
e-value: 3.6
score: 13.5
coord: 154..194
e-value: 0.0062
score: 25.7
coord: 364..403
e-value: 3.5E-7
score: 39.8
coord: 407..445
e-value: 34.0
score: 7.3
coord: 320..359
e-value: 1.2E-4
score: 31.4
coord: 197..236
e-value: 4.4E-9
score: 46.2
coord: 278..317
e-value: 5.0E-5
score: 32.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 158..194
e-value: 6.6E-4
score: 20.3
coord: 284..317
e-value: 0.0033
score: 18.1
coord: 368..403
e-value: 3.3E-6
score: 27.6
coord: 325..359
e-value: 0.0013
score: 19.4
coord: 198..236
e-value: 7.2E-6
score: 26.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 371..412
score: 16.39
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 327..361
score: 11.945
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 285..326
score: 13.616
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 161..203
score: 9.974
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 204..245
score: 12.146
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 61..254
e-value: 1.8E-20
score: 72.9
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 404..498
e-value: 1.2E-14
score: 53.8
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 304..318
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 181..195
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 390..404
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 161..499
score: 43.951
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 157..244
coord: 284..497

Blast
[Close]
BLAST of TCONS_00070982-protein vs. Swiss-Prot (Human)
Match: WDR37 (WD repeat-containing protein 37 OS=Homo sapiens GN=WDR37 PE=1 SV=2)

HSP 1 Score: 462.996 bits (1190), Expect = 5.907e-160
Identity = 252/521 (48.37%), Postives = 336/521 (64.49%), Query Frame = 0 
Query:    1 MDKEKSNGSQSGKNKPRR----LRIKRSSTKENNRTS------QTQEESSPPPYQSKLQSLFAQIEKEFQKLHHQNQELHEKVDILTEKYEQLVANGVDKSDSKIPTYNDSYAGLDTNDFYSKGNKKQSAS---SLMSQKLKTRYKASTSKLVSSFKIPNSQGGNVFCHMVQKYAGHKDGIWDLDSQKTNSFLIGTASADRTAKLWNAETGQCLITYMAHNGSVNSIRFHPTEPLACTGSGDGNAHIWKIPPLSDVRSRSPQGNSDSPAGSGEDDLE----DE----GEGTDNQQIMKIKHSSVEFSQHEGPIAVADWWENGSQIVTASWDRTVKLWDVEKATAFYTMEGHELEITHASTHSSHKLIVTSSQDTTFRLWDFRQPYMHSVNVFQGHTDTVTSAVFTTKADHVVSGSDDRTVKVWDLKNMRSPLTTIRLDSAINRLSLSPAQNIIAIPHDNRHVRLYDLAGNRMSRLPRRHRQGHRRIVCATCWHDDTNTNKPV-NLLTAGFDKQILGWKVGF 499
            M  E ++ S + + K +R    L I+R+++ E  RT       + Q+   P   +S L  LF QIE+EF+ L+ +N EL  ++D L E+   L A G                 +D  +  SKG  K  AS   S +SQKLKT YKASTSK+VSSFK   S+     C +V++Y GH+DGIWD+   KT   ++GTASAD TA LW+ ETG+CL+ Y  H GSVNSI+FHP+E LA T SGD  AHIW+      V+  +PQ  +D+   SGED++E    DE    G+ + +   +++  +S++   H+G +  +DW   G Q VTASWDRT  L+DVE +   +++ GH+ E+TH  TH + +L+VTSS+DTTFRLWDFR P +HSVNVFQGHTDTVTSAVFT   D+VVSGSDDRTVKVWDLKNMRSP+ TIR DSAINR+++   Q IIA+PHDNR VRL+D++G R++RLPR  RQGHRR+VC + W +D     PV NL T GFD+Q +GW +  
Sbjct:    1 MPTESASCSTARQTKQKRKSHSLSIRRTNSSEQERTGLPRDMLEGQDSKLPSSVRSTLLELFGQIEREFENLYIENLELRREIDTLNER---LAAEG---------------QAIDGAEL-SKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKTTTSRAA---CQLVKEYIGHRDGIWDVSVAKTQPVVLGTASADHTALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYA----VQLPTPQPVADTSI-SGEDEVECSDKDEPDLDGDVSSDCPTIRVPLTSLK--SHQGVVIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTV-GDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAINRINVCVGQKIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHRRMVCCSAWSED----HPVCNLFTCGFDRQAIGWNINI 487
The following BLAST results are available for this feature:
BLAST of TCONS_00070982-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR375.907e-16048.37WD repeat-containing protein 37 OS=Homo sapiens GN... [more]
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