TCONS_00070821-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070821-protein
Unique NameTCONS_00070821-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length926

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070821-protein ID=TCONS_00070821-protein|Name=TCONS_00070821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp
MDWFRNVPNVIRSQSAQSDHPNTSGRNSASSDSYNSGNEDNYSILNKPKY
QQHTENRSSKELDLNSSTSANHSTLSRFMNQTNVNERKKTPVREDLTCAL
CGEMYTDPRLLPCLHSFCKRCLEHTVNPRSTTLTCHLCRKEVVLKVNGIS
DFPPNFVINNQIDVESVRNSASKPMLCSSCNEQLPATARCLDCMEFLCYA
CHNAHSRVRMTKDHHILTLEQLKRSEDVSGMLHRPVFCQTHKEERVSYFC
NTCQQTICRECVITTHQQNSHEYTNIEHAIEGQRNEITSLKQVIEMKLPI
LNRATSQLSETQQKLDSRSQLITSEIEDRTPRLLKLLEQKEEEMLRELNE
IVEGKKKILQKQLEQLEVETKNLKSLYEFTGQILKTGTSAEILMVKQALC
ERMKTAVTSEQTYEPEVDDQISCDTNVDSIASAIKSYGQFSTQGEVFLKC
FVLGSVTTAVKGMSTQLTLLIKNQLGQEASVSKEDIEVEMKTPDLGIIMP
EVREKTSSTFTLNFRTYSLGIHQLHIKLKAKHITGSPFSINVINSSEKQR
RGSSDSTSSNDKSPSHLSTNYSKPLSLEINDHPSYKRSDSNEGAKNLYSN
DRHSPNPPNNYYLDKNMNPTNGIDDPNSSYRNLLLNTAELSAKYVFSIGQ
RGTNFAEFHGVFGVASDHTNKRIIATDCHNNRIQVFNEEGKFLFAFGQKG
NNDGEFQHPTGVGVGPNGEIVVCERLKGRIQVFNSEGHFQRRFILNQLKA
STLTVDIGGRIIIADYTSCCIYILDPILERWSKFGHFGQSEGELQYPGYV
ATDLKGNIFVSDMNSNKVQMYDSDSIFIRSFGHKGDGNGEFHHPTGIAID
IKGRLVVADRDNHRIQVIQTSGEYITKFGSKSEQGGDLSDLHGVTVLSNG
NIAAADLKNNKIVVFTLPHTTDPVMI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044059XLOC_044059Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070821TCONS_00070821Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003649Bbox_C
IPR001841Znf_RING
IPR000315Znf_B-box
IPR001258NHL_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR013783Ig-like_fold
IPR017868Filamin/ABP280_repeat-like
IPR017907Znf_RING_CS
IPR013087Znf_C2H2_type
IPR013017NHL_repeat_subgr
IPR014756Ig_E-set
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 334..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 543..624
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..78
NoneNo IPR availableCDDcd00021BBOXcoord: 236..267
e-value: 3.43217E-5
score: 41.504
NoneNo IPR availableCDDcd00021BBOXcoord: 176..210
e-value: 0.00102644
score: 36.8816
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 657..918
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 78..148
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 233..292
IPR003649B-box, C-terminalSMARTSM00502RAD_5coord: 290..409
e-value: 8.1E-9
score: 45.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 98..138
e-value: 7.6E-6
score: 35.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 98..139
score: 11.604
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 97..142
e-value: 5.7543E-8
score: 49.7516
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 233..276
e-value: 1.3E-5
score: 34.6
coord: 172..219
e-value: 0.018
score: 24.2
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 236..276
e-value: 1.4E-8
score: 34.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 233..276
score: 12.074
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 172..219
score: 9.542
IPR001258NHL repeatPFAMPF01436NHLcoord: 841..867
e-value: 7.7E-7
score: 28.7
coord: 706..733
e-value: 2.9E-4
score: 20.6
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 781..924
e-value: 3.9E-21
score: 74.9
coord: 636..780
e-value: 1.3E-18
score: 66.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 78..215
e-value: 2.0E-17
score: 62.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 219..285
e-value: 0.054
score: 12.8
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 98..136
e-value: 7.6E-7
score: 29.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 448..551
e-value: 7.5E-12
score: 44.8
IPR017868Filamin/ABP280 repeat-likePFAMPF00630Filamincoord: 449..538
e-value: 2.9E-7
score: 31.2
IPR017868Filamin/ABP280 repeat-likePROSITEPS50194FILAMIN_REPEATcoord: 462..542
score: 12.65
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 113..122
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 250..271
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 645..689
score: 9.149
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 753..777
score: 6.332
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 828..871
score: 14.371
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 693..736
score: 13.631
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 782..824
score: 10.444
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 875..918
score: 9.828
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 459..545

Blast
BLAST of TCONS_00070821-protein vs. Swiss-Prot (Human)
Match: TRIM3 (Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 6.059e-96
Identity = 214/821 (26.07%), Postives = 379/821 (46.16%), Query Frame = 0
Query:   93 REDLTCALCGEMYTDPRLLPCLHSFCKRCLEHTVNPRSTTLTCHLCRKEVVLKVNGISDFPPNFVINNQIDVESVRNSASKPMLCSSCNEQLPATARCLDCMEFLCYACHNAHSRVRMTKDHHILTLEQLKRSEDVSGMLHRPVFCQTHKEERVSYFCNTCQQTICRECVITTHQQNSHEYTNIEHAIEGQRNEITSLKQVIEMKLPILNRATSQLSETQQKLDSRSQLITSEIEDRTPRLLKLLEQKEEEMLRELNEIVEGKKKILQKQLEQLEVETKNLKSLYEFTGQILKTGTSAEILMVKQALCERMKTAVTSEQTYEPEVDDQISCDTNVDSIASAIKSYGQFSTQGEVFLKCFVLG-SVTTAVKGMSTQLTLLIKNQLGQEASVSKEDIEVEMKTPDLGIIMP-EVREKTSSTFTLNFRTYSLGIHQLHIKLKAKHITGSPFSINVINSSEKQRRGSSDSTSSNDKSPSHLSTNYSKPLSLEINDHPSYKRSDSNEGAKNLYSNDRHSPNPPNNYYLDKNMNPTNGIDDPNSSYRNLLLNTAELSAKYVFSIGQRGTNFAEFHGVFGVASDHTNKRIIATDCHNNRIQVFNEEGKFLFAFGQKGNNDGEFQHPTGVGVGPNGEIVVCERLKGRIQVFNSEGHFQRRFILNQLKAST-LTVDIGGRIIIADYTSCCIYILDPILERWSKFGHFGQSEGELQYPGYVATDLKGNIFVSDMNSNKVQMYDSDSIFIRSFGHKGDGNGEFHHPTGIAIDIKGRLVVADRDNHRIQVIQTSGEYITKFGSKSEQGGDLSDLHGVTVLSNGNIAAADLKNN 910
            ++ L C++C + Y  P++LPCLH+FC+RCL++ +  +S TL+C +CR+  +L   G+S    NF I++                                 ME +  A   AH      +D H L++        V+G   RP+ C  H+ + + ++C  C+  +C EC    H++  H    +   +E  +  +    + +  +LP L+ A + +    Q+L  R     ++I      L + L+Q+++ ++ +L  I   K+K+LQ QL+ L    +++ S   F  Q L+ G++ E+L+V++ + ER+           P  + Q+     VD +  ++ + G   T      +    G  +  A+ G    LT+  K++ G+       ++  E+  PD G  +P  V +  + T+ L +   + G   L + L  + + GSPF +  +   +     S D      KSP    ++  +          + +R                    P++ Y        N I+D                 + VF +G RG    EF  + GV S  ++ RI+  D +N  IQVF+ EG+F F FG +G + G+ Q PTGV V  NG+I+V +     + +F+ EG F+ +    +L     + VD  G II+ D  SCC++   P  +   +FG  G ++     P +VA + K  I V+D +++ V++Y +D  F+  FG  G+GNG+F+ PTG+A+D  G ++VAD  N RIQV  +SG +++   + +E    L    G+ + S+G++  AD  N+
Sbjct:   17 KQFLVCSICLDRYQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSALQNNFFISS--------------------------------LMEAMQQAPDGAHD----PEDPHPLSV--------VAG---RPLSCPNHEGKTMEFYCEACETAMCGECRAGEHRE--HGTVLLRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAAQAFPERPHENAQLELVLEVDGLRRSVLNLGALLTTSATAHETVATGEGLRQALVGQPASLTVTTKDKDGRLVRTGSAELRAEITGPD-GTRLPVPVVDHKNGTYELVYTARTEGELLLSVLLYGQPVRGSPFRVRALRPGDLPP--SPDDVKRRVKSPGGPGSHVRQ---------KAVRR--------------------PSSMYSTGGKRKDNPIED-----------------ELVFRVGSRGREKGEFTNLQGV-SAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDSSGSFLSYINTSAE---PLYGPQGLALTSDGHVVVADAGNH 735          

HSP 2 Score: 128.257 bits (321), Expect = 2.800e-30
Identity = 84/233 (36.05%), Postives = 118/233 (50.64%), Query Frame = 0
Query:  689 EGKFLFAFGQKGNNDGEFQHPTGVGVGPNGEIVVCERLKGRIQVFNSEGHFQRRFIL-----NQLKAST-LTVDIGGRIIIADYTSCCIYILDPILERWSKFGHFGQSEGELQYPGYVATDLKGNIFVSDMNSNKVQMYDSDSIFIRSFGHKGDGNGEFHHPTGIAIDIKGRLVVADRDNHRIQVIQTSGEYITKFGSKSEQGGDLSDLHGVTVLSNGNIAAADLKNNKIVVF 915
            E + +F  G +G   GEF +  GV    +G IVV +     IQVF++EG F+ RF +      QL+  T + VD  G II+ADY +  + I  P  +  +K G      G L  P  VA D  G+I V D  S  V  +  +   +  FG +G  +  F  P  +A++ K  +VV D  NH ++V    GE++ KFGS  E  G  +   GV V SNGNI  AD  N++I VF
Sbjct:  469 EDELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIG-----AGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVF 696          
The following BLAST results are available for this feature:
BLAST of TCONS_00070821-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRIM36.059e-9626.07Tripartite motif-containing protein 3 OS=Homo sapi... [more]
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