TCONS_00069099-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069099-protein
Unique NameTCONS_00069099-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069099-protein ID=TCONS_00069099-protein|Name=TCONS_00069099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MPSKKSKQNKPNGFVLYANEIKNQLLKEGHSIRNMPDLIAAATPKWQQLP
DDEREYYKEKAKWEWDNRHTTGKFQSRSRNHFDNTGAPVTERVDLVRVME
VKREKERQEVFMSFLPERGVLDQKFYFVSFICLLEEPKFQPIEVAATEFS
LLGGRERSFHRHLNPGPIPQGYRFKAQQHSDLTHKLPLTGKMQLGDDYTK
IYDELFHFLSKGGRHIPPIHVKVLTEKKIYW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043058XLOC_043058Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069099TCONS_00069099Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024970Maelstrom
IPR009071HMG_box_dom
Vocabulary: Biological Process
TermDefinition
GO:0060964regulation of gene silencing by miRNA
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060964 regulation of gene silencing by miRNA
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024970Maelstrom domainPFAMPF13017Maelstromcoord: 137..213
e-value: 1.5E-17
score: 63.9
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 5..63
e-value: 1.7E-9
score: 38.1
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 11..63
e-value: 4.5E-8
score: 32.9
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 7..65
NoneNo IPR availableCDDcd00084HMG-boxcoord: 11..62
e-value: 2.88525E-4
score: 36.4428

Blast
[Close]
BLAST of TCONS_00069099-protein vs. Swiss-Prot (Human)
Match: MAEL (Protein maelstrom homolog OS=Homo sapiens GN=MAEL PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.563e-19
Identity = 62/237 (26.16%), Postives = 109/237 (45.99%), Query Frame = 0 
Query:    1 MPSKKSKQNKPNGFVLYANEIKNQLLKEGHSIRNMPDLIAAATPKWQQLPDDEREYYKEKAKWEWDNRHTTGKFQSRSRNHFDNTGAPVTERVDLVRVMEVKREKERQEV-FMSFLPERGVLDQKFYFVSFICLLEEP-----KFQPIEVAATEFSLLGGRERSFHRHLNPGPIPQGYRFKAQQHSDLTHKLPLTGKMQLGDDYTKIYDELFHFLSKGGRHIPPIHVKVLTEKKIYW 231
            MP++K+ +N    +  +  E   +L + G  +  + D I   +  W  L ++E+E Y E A+ EW  R   GK    S         PV   +    ++  K+     ++  +S   ++ +L   FYF++     E P     +F P E+   ++SL  G    FH  +NPG IP+G+RF  Q  SD +HK+P++   + G +   +   L+ F+     + PPI+ K     ++ W
Sbjct:    1 MPNRKASRN---AYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAR-EW--RAAQGKDPGPSEKQ-----KPVFTPLRRPGMLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNIFSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQAASDSSHKIPIS-NFERGHNQATVLQNLYRFIHPNPGNWPPIYCKSDDRTRVNW 225
The following BLAST results are available for this feature:
BLAST of TCONS_00069099-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAEL6.563e-1926.16Protein maelstrom homolog OS=Homo sapiens GN=MAEL ... [more]
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