TCONS_00068817-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068817-protein
Unique NameTCONS_00068817-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068817-protein ID=TCONS_00068817-protein|Name=TCONS_00068817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MILLEINNTIVEETLKSRISQIAANGKADAVDIKVADFDGCIFHIGNQDE
NRNKIIVSISLKFYPELQKHGADAKIKGEYGDLMITPESGYDISLLVNLE
ALPPNSDELIKKIGLLKRNCFASVFERYFDFLEREEDSKEKAIINYRDDE
TMYVEAKADRVTVIFSTVFKDDDDVIIGKVFMQEFREGRRASQTAPQVLF
SHKEPPRELEGTNAARGDNIGYITFVLEKRHTKAAARENTINLIHTFRNY
LHYHIKCSKAYLHSRMRAKTSDFIKVLNRARPEPKTTEKKTITGKTFTRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042906XLOC_042906Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068817TCONS_00068817Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034666ARPC2/4
IPR007188ARPC2
Vocabulary: Biological Process
TermDefinition
GO:0030833regulation of actin filament polymerization
GO:0030041actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton
GO:0005885Arp2/3 protein complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030041 actin filament polymerization
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005885 Arp2/3 protein complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034666Arp2/3 complex subunit 2/4GENE3D3.30.1460.20coord: 1..130
e-value: 3.2E-42
score: 143.4
IPR034666Arp2/3 complex subunit 2/4GENE3D3.30.1460.20coord: 139..283
e-value: 9.1E-73
score: 242.5
IPR034666Arp2/3 complex subunit 2/4SUPERFAMILY69645Arp2/3 complex subunitscoord: 121..283
IPR034666Arp2/3 complex subunit 2/4SUPERFAMILY69645Arp2/3 complex subunitscoord: 1..120
IPR007188Actin-related protein 2/3 complex subunit 2PFAMPF04045P34-Arccoord: 57..283
e-value: 3.2E-99
score: 331.4

Blast
[Close]
BLAST of TCONS_00068817-protein vs. Swiss-Prot (Human)
Match: ARPC2 (Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 1.636e-154
Identity = 200/298 (67.11%), Postives = 247/298 (82.89%), Query Frame = 0 
Query:    1 MILLEINNTIVEETLKSRISQIAANGKADAVDIKVADFDGCIFHIGNQDENRNKIIVSISLKFYPELQKHGADAKIKGEYGDLMITPESGYDISLLVNLEALPPNSDELIKKIGLLKRNCFASVFERYFDFLEREEDSKEKAIINYRDDETMYVEAKADRVTVIFSTVFKDDDDVIIGKVFMQEFREGRRASQTAPQVLFSHKEPPRELEGTNAARGDNIGYITFVLEKRHTKAAARENTINLIHTFRNYLHYHIKCSKAYLHSRMRAKTSDFIKVLNRARPEPKTTEKKTITGKTFT 298
            MILLE+NN I+EETL  +    AA  K +AV++  ADFDG ++HI N + ++ K++VSISLKFY ELQ HGAD  +K  YG  ++ PESGY++SLL +LE LP + D ++ + G+LKRNCFASVFE+YF F E  ++ + +A+I+YRDDETMYVE+K DRVTV+FSTVFKDDDDV+IGKVFMQEF+EGRRAS TAPQVLFSH+EPP EL+ T+AA GDNIGYITFVL  RHT A+AR+NTINLIHTFR+YLHYHIKCSKAY+H+RMRAKTSDF+KVLNRARP+ +  E KTITGKTF+
Sbjct:    1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFS 298
The following BLAST results are available for this feature:
BLAST of TCONS_00068817-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC21.636e-15467.11Actin-related protein 2/3 complex subunit 2 OS=Hom... [more]
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