TCONS_00068552-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00068552-protein
Unique Name	TCONS_00068552-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	797

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00068552-protein ID=TCONS_00068552-protein|Name=TCONS_00068552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=797bp
MGDNLNGLRKYLEKYATLAENRTRNIDIVGNEFQEIRNIAADLKKLLPAN
EGAKDVNRKKNRYKDIIPYDVSRVKVEVTSFEDGADYINANIIKDHVKKV
CYIASQGPMPQTVVEFWRMIWGYQVKLIIMACREIEMGKARCQRYWPSKS
EEVYGDVSVTLLKETSVAKNVILRELCATRKGTKRKLYQLHYMDWPDHGA
PETFEVILHLLKIARKIQPNDENPLLVHCSAGCGRTGAIIAIDYARKLIE
ARANNISIFDIVKHLRQQRPSMVQTKEQYEFIYEVVRELVLKELKACDEE
FENCSPDATYENIQFILKEKNYNRSKSAEKTIEDSNSHISRSKSAEDVCS
KPSTPSQQRRQIVLPTEHAINTGGSFRRSRSQNRRSPNVPSAAGSRPPLP
RKGSESTDKAYSPKKKDTEACKQTPSKPLSSSTGAIQLRSQFEYENIHPP
PTAAHSKPRSTSSEPMSPFADEEYIPVAKPVGLTSYPIKTAMLNVSAIEH
QHRPIKQTRSHERIPQSSIPPSTISNINQERMKKSSSANDICNDLKESRG
GGGKQKDSKASPIDALYTPVEKSKKIAPPSTNPPNEDSLYTQVDKLKKPA
PYHSSHDKVIHKPAAPMILGSAVERNRSSVKKTIMQDKASEIKKADKWQI
SVESSTTSTSPTGGDAPPLPERTPESFIIIDDKADTQRNQQPLIKSSVLN
SSSAKPGSKGGRDVSPEEYTPVASLQSSTSQPTPQENKPSSWNPLSKMMN
KNKTNDERNSPAETKKSNSLPPLSSLGFGKRLKKKPQGPREMPLHFH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042751	XLOC_042751	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00068552	TCONS_00068552	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000242	PTPase_domain
IPR003595	Tyr_Pase_cat
IPR029021	Prot-tyrosine_phosphatase-like
IPR016130	Tyr_Pase_AS
IPR000387	TYR_PHOSPHATASE_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006470	protein dephosphorylation
GO:0016311	dephosphorylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0004725	protein tyrosine phosphatase activity
GO:0016791	phosphatase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0006470	protein dephosphorylation
molecular_function	GO:0016791	phosphatase activity
molecular_function	GO:0004725	protein tyrosine phosphatase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000242	PTP type protein phosphatase	PRINTS	PR00700	PRTYPHPHTASE	coord: 185..202 score: 44.71 coord: 256..271 score: 34.67 coord: 86..93 score: 73.46 coord: 102..122 score: 55.63 coord: 272..282 score: 64.17 coord: 224..242 score: 64.15
IPR000242	PTP type protein phosphatase	SMART	SM00194	PTPc_3	coord: 28..291 e-value: 1.1E-103 score: 360.4
IPR000242	PTP type protein phosphatase	PFAM	PF00102	Y_phosphatase	coord: 57..286 e-value: 1.6E-75 score: 253.6
IPR000242	PTP type protein phosphatase	PROSITE	PS50055	TYR_PHOSPHATASE_PTP	coord: 29..289 score: 49.699
IPR003595	Protein-tyrosine phosphatase, catalytic	SMART	SM00404	ptp_7	coord: 186..288 e-value: 2.5E-40 score: 150.0
IPR029021	Protein-tyrosine phosphatase-like	GENE3D	3.90.190.10		coord: 5..297 e-value: 5.0E-95 score: 317.6
IPR029021	Protein-tyrosine phosphatase-like	SUPERFAMILY	52799	(Phosphotyrosine protein) phosphatases II	coord: 19..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..468
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 636..797
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..435
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 502..589
None	No IPR available	CDD	cd00047	PTPc	coord: 59..288 e-value: 1.90441E-97 score: 303.738
IPR016130	Protein-tyrosine phosphatase, active site	PROSITE	PS00383	TYR_PHOSPHATASE_1	coord: 227..237
IPR000387	Tyrosine specific protein phosphatases domain	PROSITE	PS50056	TYR_PHOSPHATASE_2	coord: 208..280 score: 20.432

Blast

[Close]

BLAST of TCONS_00068552-protein vs. Swiss-Prot (Human)
Match: PTN18 (Tyrosine-protein phosphatase non-receptor type 18 OS=Homo sapiens GN=PTPN18 PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 4.524e-79
Identity = 126/325 (38.77%), Postives = 200/325 (61.54%), Query Frame = 0

Query:    1 MGDNLNGLRKYLEKYATLAENRTRNIDIVGNEFQEIRNIAADLKK--LLPANEGAKDVNRKKNRYKDIIPYDVSRVKVEVTSFEDGADYINANIIKDHVKKVCYIASQGPMPQTVVEFWRMIWGYQVKLIIMACREIEMGKARCQRYWPSKSEEV-YGDVSVTLLKETSVAKNVILRELCATRKGTKRKLYQLHYMDWPDHGAPETFEVILHLLKIARKIQPNDENPLLVHCSAGCGRTGAIIAIDYARKLIEARAN--NISIFDIVKHLRQQRPSMVQTKEQYEFIYEVVRELVLKELKACDEEF----ENCSPDATYENIQFI 316
            M  +L+  R +LE+   L     R   ++  EF +I+  +A  K   +     G++  N +KNRYKD++PYD +RV + +   E  +DYIN N I+     + YIA+QGP+P T+++FWR++W + VK+I+MACREIE G+ RC+RYW  + E +  G   +TL+KE  + ++++LR L  T +   R +YQL YM WPD G P + + +L +++ AR++Q +   PL VHCSAGCGRTG +  +DY R+L+  +    + S+FD+V  +R+QRP+ VQT+EQY F+Y  V ++    L+     +    ENC+P   Y++  F+
Sbjct:    1 MSRSLDSARSFLER---LEARGGREGAVLAGEFSDIQACSAAWKADGVCSTVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVTFQKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQMFCSTLQNASPHYQNIKENCAP--LYDDALFL 320

The following BLAST results are available for this feature:

BLAST of TCONS_00068552-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00068552-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PTN18	4.524e-79	38.77	Tyrosine-protein phosphatase non-receptor type 18 ...	[more]

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TCONS_00068552-protein (polypeptide) - C. hemisphaerica