TCONS_00068504-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00068504-protein
Unique Name	TCONS_00068504-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	338

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00068504-protein ID=TCONS_00068504-protein|Name=TCONS_00068504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MDAPWRETVNMENFEASETIQTQWCQLLVEALQRKHYLATKSLLRLADLI
YGGDRGTHPSNVQNNDFHLYFRNKELTGSERQRKHDSENISPYMRSIRES
KFSYFMVLAVQTNNLKIIRLLLTHQFNILWPHLLDCRCWLCESDKLGQAK
RRIETMQALSNPLWINLTCKDPFLTSFRIIKTCRLFRAQQDCYEKEYNLL
TRQNVNFCTGLLDQIQNEKEVKHLMRWRESNFEPFKDIHQLAFIRLGFKY
NVPEVVAHAVPQHVIMHIVSEGIPGWKSGGIVYRLIFIALVALFYPFTAI
IRILAPESYIGRMAVKPLIKFINSVASYITLLSESFVH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042728	XLOC_042728	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00068504	TCONS_00068504	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013555	TRP_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013555	Transient receptor ion channel domain	PFAM	PF08344	TRP_2	coord: 136..181 e-value: 7.6E-9 score: 35.6

Blast

[Close]

BLAST of TCONS_00068504-protein vs. Swiss-Prot (Human)
Match: TRPC5 (Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.295e-33
Identity = 85/284 (29.93%), Postives = 146/284 (51.41%), Query Frame = 0

Query:   65 NDFHLYFRNKELTGSER----QRKHDSENISPYMRSIRESKFSYF------MVLAVQTNNLKIIRLLLTHQFNILWPHLLDCRCWLC----ESDKLGQAKRRIETMQALSNPLWINLTCKDPFLTSFRIIKTCRLFRAQQDCYEKEYNLLTRQNVNFCTGLLDQIQNEKEVKHLMRWRESNFEPF--KDIHQLAFIRLGFKYNVPEVVAHAVPQHVIMHIVSEGIPGWKSGGIVYRLIFIALVALFYPFTAIIRILAPESYIGRMAVKPLIKFINSVASYITLL 332
             D  LY   KE+ G+       R+   E   P +  + +++FS F      ++LA  TNN +II+LL+  +  I  PH + C C  C    E D L  ++ R+   +AL++P  I L+ +DP LT+FR+    +     ++ ++ EY  L++Q   F   LLDQ ++ +E++ ++  R+ + E    +  H LA +++  KY+  E VA    Q ++  +  +G PGW+    V +L+    +   +P  +I  +++P S +G    KP IKFI   ASY+T L
Sbjct:   97 GDALLYAIRKEVVGAVELLLSYRRPSGEKQVPTL--MMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFICHTASYLTFL 378

The following BLAST results are available for this feature:

BLAST of TCONS_00068504-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00068504-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRPC5	1.295e-33	29.93	Short transient receptor potential channel 5 OS=Ho...	[more]

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TCONS_00068504-protein (polypeptide) - C. hemisphaerica