TCONS_00068277-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068277-protein
Unique NameTCONS_00068277-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068277-protein ID=TCONS_00068277-protein|Name=TCONS_00068277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MLLKRLLNKVVCDCSRNYHHARPVIKYNLTKPAVDLAKHDPENKFSPLVR
EFIEARDFENHTSDRTINVISFEDGKIKGDIQLNNFVFGANPRMDILHRN
VVWYRASIRAGTASVKRRSEVRGGGRKPWRQKGTGKARQGSIRAPHWRKG
GSAKGPKPRDWAYDLPYKVRRLGLRTALSARLAQGDLTVVEDLSSLPSSS
EDFGEILREHGLQNSLIVDGFENFNLNEVTEPLEKVDATHSLFLHVYGIM
IRHKLVLSLQALRILEEKLCEDGRIITDPNYELYHQDMLLDKKLLYKEYD
PKAKELRGRLIPKPKKVDRRSLKYSRQDLKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042615XLOC_042615Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068277TCONS_00068277Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013005Ribosomal_uL4/L1e
IPR023574Ribosomal_L4_dom
IPR002136Ribosomal_L4/L1e
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR01300550S ribosomal protein uL4TIGRFAMTIGR03953TIGR03953coord: 81..267
e-value: 3.0E-56
score: 187.7
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 73..270
score: 28.38
IPR023574Ribosomal protein L4 domainGENE3D3.40.1370.10coord: 65..202
e-value: 5.8E-51
score: 172.6
coord: 203..268
e-value: 0.058
score: 12.1
IPR023574Ribosomal protein L4 domainSUPERFAMILY52166Ribosomal protein L4coord: 72..269
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 81..268
e-value: 1.1E-56
score: 191.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..157

Blast
[Close]
BLAST of TCONS_00068277-protein vs. Swiss-Prot (Human)
Match: RM04 (39S ribosomal protein L4, mitochondrial OS=Homo sapiens GN=MRPL4 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.055e-37
Identity = 88/211 (41.71%), Postives = 124/211 (58.77%), Query Frame = 0 
Query:   72 FEDGKIKGDIQLNNFVFGANPRMDILHRNVVWYRASIRAGTASVKRRSEVRGGGRKPWRQKGTGKARQGSIRAPHWRKGGSAKGPK-PRDWAYDLPYKVRRLGLRTALSARLAQGDLTVVEDLSSLPSSSEDFGEIL---REHGLQNSLIVD-GFENF--NLNEVTEPLEKVDATHSLFLHVYGIMIRHKLVLSLQALRILEEKLC-EDGR 274
            FE  ++ G   L+  VF   PR+DILH+  +W +   R   A  K R+EVRGGGRKPW QKGTG+AR GSIR+P WR GG A GP+ P  + Y LP KVR LGL+ AL+ +LAQ DL +++ L  LP+    +   L   R  G  + L+VD   E    ++ E T  L+  +   ++ L+V+ ++    LVL+L  +  LE+KL  +D R
Sbjct:   72 FEQERV-GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSL-ELPTGDPQYLTELAHYRRWG-DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSR 279
The following BLAST results are available for this feature:
BLAST of TCONS_00068277-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM043.055e-3741.7139S ribosomal protein L4, mitochondrial OS=Homo sa... [more]
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