TCONS_00068110-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068110-protein
Unique NameTCONS_00068110-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068110-protein ID=TCONS_00068110-protein|Name=TCONS_00068110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=753bp
MASTYDVMSSEVIENIYEQLICPVCLDPFKEPKFLKCLHTFCNHCIHEIV
NQEPRDVIICPTCRVETPIPETGLDALKKNFFANSMLDLVAYQYEEIKKE
KQKLGDCDQCADKDNVSSRCLECDLPLCSICVADHRRGHTTMDHRIVSTS
DEDFHADKNSSDQYTLTFCKYHTRNVIKYFCNTCDETVCRVCTILEHREH
QFVYPKEAIPQQRPIIQELLTQTKQHIPVLRHTLKDISNMQEVLVDCKTT
LLEEINTRTQQKIEELLGCKEDLIADLDKIYNSKQKTLSLQKDSIELELG
KLVGSCDFAQNIIQVGNDVEILRIKSRLQQLNKLDINLDPEEDDSIQYLK
DESPEFPLGCIAATQTFASLSYAQGEAFETARAGSETSIVVVAQTRHGQK
NIGQDKVEAHLVAPDQTKKSIEATDNNDGTYSIRFTPDISGKHMLEVTIK
EKPIRGSPFPIIVTNRREYNEVGLSLFKFGQYGSKKREFKSPFGVASDSE
GFMFVADSYNHRIQTFGPRGEFINMFGSHGERKGEFNCPTDVAVSPNNRI
AVCDNGNNRVQVFSKRGSFIAKFGREGTKNGLFKSPWGITISQTSREIIV
ADTDNHRIQIFSAEGKFIMKFGSQGDRAGQFNSPCYVAVNPDKEHILVSD
SKNHRIQIFDKRGKFIQLFGVQGQLDGQFNHPRGLSMDIANNIIVSDMGN
HRLQVLTYSGKMIKCIGSEGNGDGQLSFPESVSVTQNGYIIVSDLSNNRI
QVF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042522XLOC_042522Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068110TCONS_00068110Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003649Bbox_C
IPR000315Znf_B-box
IPR001298Filamin/ABP280_rpt
IPR001258NHL_repeat
IPR013783Ig-like_fold
IPR0110426-blade_b-propeller_TolB-like
IPR018957Znf_C3HC4_RING-type
IPR017868Filamin/ABP280_repeat-like
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR013017NHL_repeat_subgr
IPR014756Ig_E-set
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 22..63
e-value: 1.2E-6
score: 38.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 22..64
score: 12.681
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 22..67
e-value: 1.06904E-8
score: 51.2924
IPR003649B-box, C-terminalSMARTSM00502RAD_5coord: 212..334
e-value: 0.0016
score: 27.7
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 164..205
e-value: 0.0074
score: 25.5
coord: 102..149
e-value: 0.83
score: 8.3
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 167..203
e-value: 4.7E-8
score: 33.0
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 164..205
score: 10.722
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 102..149
score: 8.816
IPR001298Filamin/ABP280 repeatSMARTSM00557flmn_3coord: 367..466
e-value: 1.3E-13
score: 61.2
IPR001258NHL repeatPFAMPF01436NHLcoord: 583..611
e-value: 8.2E-8
score: 31.8
coord: 726..753
e-value: 1.1E-4
score: 22.0
coord: 679..705
e-value: 3.7E-4
score: 20.3
coord: 637..659
e-value: 1.7E-5
score: 24.5
coord: 490..516
e-value: 4.2E-4
score: 20.1
coord: 536..563
e-value: 2.6E-9
score: 36.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 363..468
e-value: 1.1E-23
score: 82.9
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 469..574
e-value: 3.1E-17
score: 62.2
coord: 575..670
e-value: 1.9E-17
score: 62.9
coord: 671..753
e-value: 2.7E-13
score: 49.2
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 22..63
e-value: 6.1E-8
score: 32.3
IPR017868Filamin/ABP280 repeat-likePFAMPF00630Filamincoord: 367..459
e-value: 9.3E-15
score: 55.2
IPR017868Filamin/ABP280 repeat-likePROSITEPS50194FILAMIN_REPEATcoord: 363..463
score: 21.774
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 152..213
e-value: 0.0062
score: 15.8
coord: 4..151
e-value: 3.0E-18
score: 65.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 37..46
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 526..566
score: 15.687
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 666..709
score: 13.467
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 476..519
score: 11.637
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 713..753
score: 11.493
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 570..614
score: 13.837
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 620..662
score: 13.425
NoneNo IPR availableCDDcd00021BBOXcoord: 167..203
e-value: 3.86439E-6
score: 43.8151
NoneNo IPR availableCDDcd14954NHL_TRIM71_likecoord: 467..753
e-value: 2.41295E-141
score: 418.875
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 489..753
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 14..71
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 165..224
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 356..468

Blast
[Close]
BLAST of TCONS_00068110-protein vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 1.029e-119
Identity = 216/676 (31.95%), Postives = 353/676 (52.22%), Query Frame = 0 
Query:  107 CDQCADKDNVSSRCLECDLPLCSICVADHRRGHTTMDHRIVSTSDEDFHADKNSSDQYT-----------------LTFCKYHTRNVIKYFCNTCDETVCRVCTILEHREHQFVYPKEAIPQQRPIIQELLT---QTKQHIPVLRHTLKDISNMQEVLVDCKTTLLEEINTRTQQKIEELLGCKEDLIADLDKIYNSKQKTLSLQKDSIELELGKLVGSCDFAQNIIQVGNDVEIL----RIKSRLQQLNKLDINLDPEEDDSIQYLKDESPEF----PLGCIAATQTFASLSYAQGEAFETARAGSETSIVVVAQTRHGQKNI-GQDKVEAHLVAPDQTKKSIEATDNNDGTYSIRFTPDISGKHMLEVTIKEKPIRGSPFPIIVTNRREYNEVGLSLFKFGQYGSKKREFKSPFGVASDSEGFMFVADSYNHRIQTFGPRGEFINMFGSHGERKGEFNCPTDVAVSPNNRIAVCDNGNNRVQVFSKRGSFIAKFGREGTKNGLFKSPWGITISQTSREIIVADTDNHRIQIFSAEGKFIMKFGSQGDRAGQFNSPCYVAVNPDKEHILVSDSKNHRIQIFDKRGKFIQLFGVQGQLDGQFNHPRGLSMDIANNIIVSDMGNHRLQVLTYSGKMIKCIGSEGNGDGQLSFPESVSVTQNGYIIVSDLSNNRIQVF 753
            C  C + +  SSRCL+C   LC  CV  H+R   T DH I         A                          L FC++H   V+  +C+TC   +CR CT+  H  H F+Y +EA+   R +  +LL    Q +Q I +     + ++   E+      + ++ +  R ++ +EE    + +L+  ++KI   K K+L LQ + +   L KL  +    Q +++ G  ++IL    R+ +++Q+L  +   L P+EDD + +   +   +      G +++   FA L+ A G+  + A  G   S  V+     G+  + G D + A ++ PD      E +D  +GTY + + P + G+H++ VT+  + I  SPF ++V + R Y  +GL    FG  G    +   P+GV+ D EG++ VAD  N+RIQ F P G F + FG+ G R G+F+ P  VA   + RI V D  N+R+Q+F+  G F+ KFG +GTKNG F  PW + ++   + I+V+DT NHRIQ+F  +G F+ K+G +G     F+SP  VA N  + H++V+D  NHR+ +     +  +  G +G  +GQF  P+G+++D    IIV+D  NHR+Q+   +G  +   G++G+G GQ+  P  +++T +G I+V D  NNRI VF
Sbjct:  199 CSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEER---ECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVSSG-AFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK-ILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFN-HEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00068110-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN411.029e-11931.95E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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