TCONS_00067971-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067971-protein
Unique Name	TCONS_00067971-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	738

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067971-protein ID=TCONS_00067971-protein|Name=TCONS_00067971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp
WNQLISSFIEGMELKRRRYRFKSYENSFSGTDALDWMLKYLQNHPSYGDN
ITKEQAFMLLQKFMDNKVFESVTGKIDKFQDSNSLYKFNKEKEPETDGQS
STKKITIPSQNSITNLLNNVTKDLEKESQDTNALTKQDNQPKTSALFEPC
DEENLEVHSGPGFFTRSSSLRLRKPLTSLTNNALNKADHKGESKSTNKHL
KPGKPFTALNTNVSNKATMKSLTTNNNKNLKANKKQGLTMPPIKRSLNEQ
FSMQVTADRKRKSTPHQDPTIISNGAGKNPKFSKKLFKTAINNNSKQPFS
KLGINKIESVDNINEKFFTANSAVTPEKMDTSPVSNLYKSQQIMQHFSPS
PMRRKLRKSRSSDLMKLYKSRSQYDLAKSHCSGEQGLYKANSSWDLNNLE
GSANGRNFMLSKERLTPEQLQDTWKSVVLLSLRKLMRMEHVGEYIDEYQI
SGQAIMQNMECNEKSVKDSIPEWLFSAMECLMKWPNYDQRGVVGDLPNYI
GFHCDVFHAIKEHYHSSSDDPLIPCHLTSLLEECMEYADTDIEITIQVLQ
HMILLIDNEQRCHLQALVYFMKKVSDNPFLRISNDLSNKDLMVHSFFRII
SRKESHFLINQTEILGIRVVYCLMQFYDEIFTAPKGLRVQVDHKIAVIYG
NLHQNAQKRIKIDTGRPSSADAVNKRVIKRPVTYCEQISKQEYQQEAVDF
SKQEIKKLLQAIVNDRSLSSKEVTRRLGQFKTAYPDIY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042453	XLOC_042453	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067971	TCONS_00067971	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000591	DEP_dom
IPR011991	WHTH_DNA-bd_dom
IPR008936	Rho_GTPase_activation_prot

Vocabulary: **Biological Process**
Term	Definition
GO:0035556	intracellular signal transduction
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0007165	signal transduction

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..137
None	No IPR available	GENE3D	1.10.555.10		coord: 501..649 e-value: 2.7E-12 score: 45.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..210
IPR000591	DEP domain	SMART	SM00049	DEP_3	coord: 8..90 e-value: 3.7E-15 score: 66.4
IPR000591	DEP domain	PFAM	PF00610	DEP	coord: 11..88 e-value: 5.5E-18 score: 64.7
IPR000591	DEP domain	PROSITE	PS50186	DEP	coord: 8..90 score: 12.648
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 1..155 e-value: 5.8E-24 score: 84.0
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 3..93
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 516..633

Blast

[Close]

BLAST of TCONS_00067971-protein vs. Swiss-Prot (Human)
Match: DEP1B (DEP domain-containing protein 1B OS=Homo sapiens GN=DEPDC1B PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.464e-24
Identity = 90/342 (26.32%), Postives = 169/342 (49.42%), Query Frame = 0

Query:  409 MLSKERLTPEQLQDTWKSVVLLSLRKLMRMEHVGEYIDEYQISGQAIMQNMECNEKS---VKD----SIPEWLFSAMECLMKWPNYDQRGVVGDL--PNYIGFHCDVFHAIKEHYHSSSDDPLIPCHLTSLLEECMEYADTDIEITIQVLQHMILLIDNEQRCHLQALVYFMKKVSDNPFLR-ISNDLSNKDLMVHSFFRII--SRKESHFLINQTEILGIRVVYCLMQFYDEIFTAPKGLRVQVDHKIAVIYGNLHQNAQKRIKIDTGRPSSADAVNKRVIKRPVTYCEQISKQEYQQEAVDFSKQEIKKLLQAIVNDRSLSSKEVTRRLGQFKTAYPDIY 738
            ++ + +LT   +++ WKS+ L  L+K++ ++ + E +D   ++ + I+ N+    K    + D     +P W+ SAM+CL  WPN        DL  P Y+GF  DVF  I ++Y     +PL+  HL       +     + ++ ++  Q   LL+  E R  LQ L+  M ++  N  +  + +    + LMV +F R I  S+ E    ++  E+L  R+V  LM  Y EI   P  L+  ++ ++A +         +R++I           +  +     ++C QIS +E++ +    S++ +  LL+ ++ D  LS+KE  ++L QF+ +YP++Y
Sbjct:  171 LVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPN------CSDLKQPMYLGFEKDVFKTIADYY-GHLKEPLLTFHLFDAFVSVLGLLQKE-KVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDE----VDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHL---------RRVQI------KYPGADMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITDAKLSNKEKKKKLKQFQKSYPEVY 485

The following BLAST results are available for this feature:

BLAST of TCONS_00067971-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067971-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DEP1B	2.464e-24	26.32	DEP domain-containing protein 1B OS=Homo sapiens G...	[more]

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TCONS_00067971-protein (polypeptide) - C. hemisphaerica