TCONS_00067821-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067821-protein
Unique Name	TCONS_00067821-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	242

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067821-protein ID=TCONS_00067821-protein|Name=TCONS_00067821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MARDTWGQDYRDVEEFAQEIMELINERNSQSRIGGSGSAKIQSLIRTKLQ
NFSQEIEKLKKQLARSRNSITPQEADRRQQQIYKLVSREKQLNEAFKPQG
GGFGGNDSGRSGLLNEGFDVERNSGGFGGASRGGNTFDDENLTPDGYQQR
QDQVIREQDKGLDALHAVIQRQKQMGHAIGDEVDHQNDLIDDINDHVDKT
DQKLIRTEAKLQKTTKKAGTCCLMVVVVLLFIAIIVVAAIPK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042355	XLOC_042355	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067821	TCONS_00067821	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..69
None	No IPR available	COILS	Coil	Coil	coord: 197..217
None	No IPR available	GENE3D	1.20.5.110		coord: 119..218 e-value: 1.9E-18 score: 65.8
None	No IPR available	CDD	cd15852	SNARE_Syntaxin8	coord: 155..206 e-value: 3.06046E-21 score: 83.4339
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 147..213
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 147..214 e-value: 2.0E-15 score: 67.3
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 152..214 score: 17.454

Blast

[Close]

BLAST of TCONS_00067821-protein vs. Swiss-Prot (Human)
Match: STX8 (Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.746e-29
Identity = 87/234 (37.18%), Postives = 126/234 (53.85%), Query Frame = 0

Query:    1 MARDTWGQDYRDVEEFAQEIMELINERNSQSRIGGSGSAKIQSLIRTKLQNFSQEIEKLKKQLAR--SRNSITPQEADRRQQQIYKLVSREKQLNEAFKPQGGGFGGNDSGRSGLLNEGFDVERNSGGFGGASRGGNT---FDDENLTP----DGYQQRQDQVIREQDKGLDALHAVIQRQKQMGHAIGDEVDHQNDLIDDINDHVDKTDQKLIRTEAKLQKTTKKAGTCCLMV 225
            MA D W   Y    + AQEI E I +RN   R  G  + K+   IR  LQN  ++I  LK  L R  S + IT  E DRRQ  +  LV+RE+ L  +FK +G      D  RS L++E             A RG      F++   T     D  +Q+Q ++I+EQD GLDAL ++I RQKQMG  IG+E+D QN++IDD+ + V+ TD+KL     ++    +K+ +C +++
Sbjct:    1 MAPDPWFSTYDSTCQIAQEIAEKIQQRNQYER-KGEKAPKLTVTIRALLQNLKEKIALLKDLLLRAVSTHQITQLEGDRRQNLLDDLVTRERLLLASFKNEGAE---PDLIRSSLMSEE------------AKRGAPNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRNETRRVNMVDRKSASCGMIM 218

The following BLAST results are available for this feature:

BLAST of TCONS_00067821-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067821-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STX8	3.746e-29	37.18	Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2	[more]

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TCONS_00067821-protein (polypeptide) - C. hemisphaerica