TCONS_00067593-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067593-protein
Unique Name	TCONS_00067593-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1022

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067593-protein ID=TCONS_00067593-protein|Name=TCONS_00067593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp
IIIETMVENFDIDDPSDWPKEFENLKKIESLLRCSICFEYFHAAVIAPNC
SHNYCSLCIRKHVLYKNNCPSCNKDLDDSSLKPNRVLDELVQYFKIARKQ
LLDLVQVAEEHHGNLNTNPASTIKIDLDEKESRVESEDTSDFEEAANYRL
PLLETKAHPSSHQKLQNRSVCMNSTVANHGNKAVVQCPNCDKPVLEKGIN
THLDVCLSGGIAKTRSAAGNKRLHSSGSSENDQPRPKAKRKNESKKSGST
SKMKIETANDIISGRKVNVRKHLPKQCLDVMSDKQLKTKLKEYNLSTKGD
KNTLKRRLKDFHTMYNSECDALNPLSAQEIARKLTLEEEHIKKHGYKPKT
LVSTHDRSVTEQHKIDIIHKHDQTYDDHFKKLEEEAKKRLGIHMTSQKSQ
QSLTVKTEDNNTANDTCYQQGPSTSHSRSPLEPDIIDLRSQLVSPEGKST
YTFRIDDDTTPVKIKDERERSSSNVPIIGANKNYDSSQNVSSGVVSTSNH
NVKSPYFSETNTTKRLKIGCRQNLKASNKLFEHETKREDESNEENDNEGP
EYDFDTSHFKGNQTETETETDTDEGPDEREQVKSPSANSKISLPYPVLSK
DFYRRLGESLHQERNAEQSKENQTNKQTETLELNKQSSKDFEQDSDPDIF
DTSTFNQGKTKKKAKSSIKVKKEPMPSPKKDYKKSEKNKPPLSAKGTKKP
AAKRKGTSLKTKQNETISKHSKSTLENYFTKVKTSPATTPTKPNNTLPSS
FFAARKPKTPELPKLMIIESSSSSSDSDMNKTLEDNQNQPSSISESPVLF
GRPPFNSTVINKRDTSVRESHNKQCGSHFKENDNLGLSRQHRSHVAGNFC
QQNESFRTTENKRLFSPKIKSPTESSMRQVTSNFGERMRNYNDLFADTTL
TRDHSRDSDNDNDFIQDSRSRTKTKEANSNKKLSRTDSSHFVTNNEQNYE
GHTNQPVTVDQSLENHIDELVDGIPSEGMDSDVTLSDFNDDVTDDITGKE
NDIIPPPPMDFTCAFESQSQMF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042206	XLOC_042206	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067593	TCONS_00067593	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003034	SAP_dom
IPR006642	Znf_Rad18_put
IPR001841	Znf_RING
IPR018957	Znf_C3HC4_RING-type
IPR004580	Rad18
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046872	metal ion binding
GO:0003684	damaged DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003034	SAP domain	SMART	SM00513	sap_9	coord: 278..312 e-value: 0.0019 score: 27.4
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 281..311 e-value: 9.4E-7 score: 28.3
IPR003034	SAP domain	GENE3D	1.10.720.30		coord: 223..343 e-value: 1.3E-5 score: 24.6
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 278..312 score: 9.107
IPR006642	Zinc finger, Rad18-type putative	SMART	SM00734	c2hc_5	coord: 184..207 e-value: 0.0048 score: 26.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 34..72 e-value: 2.0E-5 score: 34.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 34..73 score: 10.97
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 34..76 e-value: 3.68164E-11 score: 58.9964
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 34..72 e-value: 7.7E-6 score: 25.6
IPR004580	DNA repair protein, Rad18	TIGRFAM	TIGR00599	TIGR00599	coord: 8..390 e-value: 9.5E-54 score: 181.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 11..107 e-value: 8.7E-18 score: 63.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 814..833
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 394..432
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 529..803
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 465..508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 901..953
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..257
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 26..98
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 50..59

Blast

[Close]

BLAST of TCONS_00067593-protein vs. Swiss-Prot (Human)
Match: RAD18 (E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens GN=RAD18 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.135e-34
Identity = 128/429 (29.84%), Postives = 195/429 (45.45%), Query Frame = 0

Query:   16 SDWPKEFENLKKIESLLRCSICFEYFHAAVIAPNCSHNYCSLCIRKHVLYKNNCPSCNKDLDDSSLKPNRVLDELVQYFKIARKQLLD--LVQVAEEHHGNLNTNPASTIKIDLDEKESRVESEDTSD---FEEAANYRLPLL----------ETKAHPSSHQKLQNRSVCMNSTVANHGNKA----------VVQCPNCDKPVL-----EKGINTHLDVCLSGGIAKTRSAAGNKRLHSSGSSENDQPRPKAKRKNESKKSGSTSKMKIETANDIISGRKVNVRKHLPKQCLDVMSDKQLKTKLKEYNLSTKGDKNTLKRRLKDFHTMYNSECDALNPLSAQEIARKL-TLEEEHIKKHGYKPKTLVSTHDRSVTEQHKIDIIH-KHDQTYDDHFKKLEEEAKKRLGIHMTSQKSQQSLTVKTEDNNT 412
            S WP     +K I+ LLRC ICFEYF+ A+I P CSHNYCSLCIRK + YK  CP+C   + +  LK NR+LDELV+    AR  LL   L   A+    + + N A  +   +  ++S  +     D     E +     LL          + +A P++  K + RSV     +A   ++A          + Q    D PV      E  IN HLD CLS            K+     S    +P PK                   T  +++S R  +++K L +  L +  +KQ                  L +R ++F  MYN++CDAL+P SA EI R++  +E+  ++    K    V    +  TE+ +ID IH K+ + +   F+ L ++A+K  G    +  SQ+++T+  ED +T
Sbjct:    7 SRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTK-ETRSV---EEIAPDPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLS---------REEKKESLRSSVHKRKPLPK-------------------TVYNLLSDR--DLKKKLKEHGLSIQGNKQ-----------------QLIKRHQEFVHMYNAQCDALHPKSAAEIVREIENIEKTRMRLEASKLNESVMVFTKDQTEK-EIDEIHSKYRKKHKSEFQLLVDQARK--GYKKIAGMSQKTVTITKEDEST 381

The following BLAST results are available for this feature:

BLAST of TCONS_00067593-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067593-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAD18	2.135e-34	29.84	E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens ...	[more]

You are here

TCONS_00067593-protein (polypeptide) - C. hemisphaerica