TCONS_00067477-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067477-protein
Unique Name	TCONS_00067477-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	709

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067477-protein ID=TCONS_00067477-protein|Name=TCONS_00067477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
NVTQVDRKSFCSSGDSLISNLQGITTLGINNIKTITQDCCPADTVGEESF
KGVYNYNVTLVNTDVRQTCVYSASSLSARQCIQNLKLGPQWGEADLEQCS
AKSDVTNQLIELTKELTCTTGNCTLNVVKVTENLREIVNNNTAITTRQDL
EFIADIVGNTADSNTTSSETKLGAENIMKTVDVVVVSDKSIIAESEEKTQ
SSTKLVKNLEKLTSAIGKVVEETKEPFSVTGENTALIVNFEPPKALTLIA
RDLTSSDNQNEINIAIMNSTTSPPKKRPSLVRAEIPAEAFGNKSQAVSSL
IFRENTLLQETNNTNPVISSVLSISVGDQPVSNLTTPLILRFQRTTPNET
LDGTDLCSFWDFSASTGEAGRFGRWSTDGCRLIANQTTATDVVCECDHMT
NFAILFDVSQTQSNPLELQIITWIGCGISIAGLFITLVTYLYFYNLRTKL
APKILINLSISMLCLLILFISVVDRTTPRVGCKIIAGLIQYFMLSTFCWM
AVEGANLYRMFVTIFSSGSTGKFYKKASIFGWGLPALIVIITGAVSPENM
GNEQFCVTVGYPFYFAVLLPVCLILMFNFAIITLVMRSLVRTKANAVGQG
KSIQQQAKIAFAASALLGLTWIFGVLAVGDLRDFFQYLFTIFNSLQGFFI
FFFYTLRNPEAKKNWLITLGLRDEKLYSLTDSTAAYNRQRRTGAGTSTST
SVYVSSTSA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042141	XLOC_042141	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067477	TCONS_00067477	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 420..444 score: 25.56 coord: 636..657 score: 27.97 coord: 565..590 score: 25.03 coord: 484..507 score: 32.42 coord: 524..549 score: 23.86
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 417..650 e-value: 9.7E-43 score: 146.1
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 353..411 e-value: 1.2E-11 score: 54.7
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 357..405 e-value: 2.6E-13 score: 50.3
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 354..411 score: 15.856
None	No IPR available	GENE3D	1.20.1070.10		coord: 406..694 e-value: 4.5E-38 score: 130.4
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 403..671
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 418..658 score: 29.614

Blast

[Close]

BLAST of TCONS_00067477-protein vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 9.123e-60
Identity = 180/664 (27.11%), Postives = 314/664 (47.29%), Query Frame = 0

Query:   32 IKTITQDCCPADTVGEESFKGVYNYNVTLVNTDVRQTCVYSASSLSARQCIQNLKLGP-QWGEADLEQCSAKSDVTNQLIELTKELTCTTGNCTL---NVVKVTENLREIVNNNTAITTRQDLEFIADIVGNTADSNTTSSETKLGAENIMKTVDVVVVSDKSIIAESEEKTQSSTKLVKNLEKLTSAIGKVVEETKEPFSVTGENTALIVNFEPPKALTLIARDLTSSDNQNEINIAIMNSTTSPPKKRPSLVRAEIPAEAFGNKS----------QAVSSLIFRENTLLQETNNTNPVISSVLSISVGDQP-VSNLTTPLILRFQRTTPNETLDGTDLCSFWDFSASTGEAGRFGRWSTDGCRLIANQTTATDVVCECDHMTNFAILFDVSQTQSNPLELQI---ITWIGCGISIAGLFITLVTYLYFYNLRTKLAPKILINLSISMLCL-LILFISVVDRTTPRVGCKIIAGL-IQYFMLSTFCWMAVEGANLYRMFVTIFSSGSTGKFYKKASIFGWGLPALIVIITGAVSPENMGN----EQFC-VTVGYPFYFAVLLPVCLILMFNFAIITLVMRSLVRTKAN-AVGQGKSIQQQAKIAFAASALLGLTWIFGVLAVGDLRDFFQYLFTIFNSLQGFFIFFFYTLRNPEAKKNWLITL 669
            +K +    C AD    + +KG Y + +T      +  C+ +    + R C  ++  G  QW +   +QC    ++ +++++L         N T+   N   V E++  ++N + A+  +++ + I   + + +  +    E  +   ++M  +  VV+          EK  +S     +L ++++ I +++E T      +G+   L V      AL ++  D T   +    +I      T P     ++    I A  +  KS          Q +    F + +L +  N T  + + V+S S+ D   + NL  P+++  Q    N+   G   C+FWDF  + G     G W++ GC++   +T     +C+CDH+T+F +L D+S++  + +  QI   IT+ GCGIS   L + +VTY+ F+ LR     KILINL  ++L L L+  I+    +  +VG  I A + + YF+L +F WM +E  ++Y   V +F+      +  K  + GWG+PA++V IT +V  +  G       FC +     FY +V+   CLI + N ++   V+  L   K+     + K I    K   + + LLGLTW F   A G +R+FF YLF IFN+LQGFFIF F+ +     ++ W I L
Sbjct: 2378 VKKLEPGNCKADETASK-YKGTYKWLLTNPTETAQTRCIKNEDGNATRFCSISINTGKSQWEKPKFKQCKLLQELPDKIVDL--------ANITISDENAEDVAEHILNLINESPALG-KEETKIIVSKISDISQCD----EISMNLTHVMLQIINVVL----------EKQNNS---ASDLHEISNEILRIIERTGHKMEFSGQIANLTVAG---LALAVLRGDHTF--DGMAFSIHSYEEGTDPEIFLGNVPVGGILASIYLPKSLTERIPLSNLQTILFNFFGQTSLFKTKNVTKALTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNY-GQVHCAFWDFENNNG----LGGWNSSGCKV--KETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNI-YIPNYILKFCLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNSVKSQIQKTRRKMILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQWQIHL 3001

The following BLAST results are available for this feature:

BLAST of TCONS_00067477-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067477-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG4	9.123e-60	27.11	Adhesion G-protein coupled receptor G4 OS=Homo sap...	[more]

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TCONS_00067477-protein (polypeptide) - C. hemisphaerica