TCONS_00067462-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067462-protein
Unique NameTCONS_00067462-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067462-protein ID=TCONS_00067462-protein|Name=TCONS_00067462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp
MLQDSMFSAFSNDNFLKQTTMDNNYASYNSSHSSFSFSSGLEFNAFRTTA
TTFSSNDNNNSTSSSQVIAPSQNNQLNQDPRGDGSSLLRNTEILLQRQAS
LNEAALLQPGSCNINNNNNRQGYDNHNMPPSKVVHCRAVADGCKETDLVQ
VMRPFGNIKALTLMPKLRQALVEFEDVESAITCVSFASQLQPILVLGRQM
YVNYSKSTEINRDFSSSASVGQTPTNILLFTIINAIHPVNVETVKKISQQ
HAEVQRIVIFHKNGLQALVEFLTIDDAQNVQQALNGCDIFAGCCTLKIDF
SKTGRLNVHANTTETYDVEIEKRKRGGSLLALMNHSIEAGSHTASSKSST
PMDFPLKDPSPIGTGSLSTYTSALQAPMQPTTQSSMTGSSSMTSLSSQTQ
ESRQPPNLSALHSMNEVFSNLSQQKPPSPPHQPPTPTQPTVPGIDTSKLN
QEAITALLAGAAGFPAVQSIIAKVMAPNPSSSSMASHTSSQYSSGLNNLL
TSSMDSSADSDSGSSSMSSGINRTTLLTGMPNSMDSFSSPFAALGGGLSM
AGGEGCVAMVYGVNSERMNCDHLFNLFCLYGNVVKVKTLVNKPGAAMIQY
TDKMSTDISIRNLNNLTLFGQKFQLSFSKHPFIADASQVTPLFDGSPSAV
SYADSRNNRFKYIPGGVDIFSRIHPPSKVLHYFNAPPDCSEDHLKQVFHS
LGAEIPIKQATFSKSNGKSSSGLLEFSSVPTAVEALILANHFTMQRDIRI
EDPFQMLDKGGAAYTLKLAFSPSNAINN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042135XLOC_042135Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067462TCONS_00067462Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 133..203
e-value: 6.7E-5
score: 32.3
coord: 227..299
e-value: 0.63
score: 8.3
coord: 557..626
e-value: 0.013
score: 23.5
coord: 679..751
e-value: 0.7
score: 7.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 140..185
e-value: 6.3E-5
score: 22.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 132..207
score: 8.689
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 556..630
score: 9.354
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 675..744
coord: 568..640
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 238..312
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 118..217
NoneNo IPR availablePFAMPF13893RRM_5coord: 220..307
e-value: 0.021
score: 14.3
coord: 549..655
e-value: 4.0E-31
score: 107.1
NoneNo IPR availableGENE3D3.30.70.330coord: 114..220
e-value: 4.2E-10
score: 39.2
NoneNo IPR availableGENE3D3.30.70.330coord: 368..638
e-value: 6.8E-6
score: 25.4
NoneNo IPR availableGENE3D3.30.70.330coord: 675..752
e-value: 3.1E-5
score: 23.6
NoneNo IPR availableGENE3D3.30.70.330coord: 221..303
e-value: 8.9E-6
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 496..525
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..445
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..407
NoneNo IPR availableCDDcd12694RRM2_hnRNPL_likecoord: 225..310
e-value: 1.2717E-45
score: 157.122
NoneNo IPR availableCDDcd12424RRM3_hnRNPL_likecoord: 557..627
e-value: 7.8213E-30
score: 112.671

Blast
[Close]
BLAST of TCONS_00067462-protein vs. Swiss-Prot (Human)
Match: HNRPL (Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.805e-47
Identity = 90/194 (46.39%), Postives = 125/194 (64.43%), Query Frame = 0 
Query:  124 DNHNMPPSKVVHCRAVADGCKETDLVQVMRPFGNIKALTLMPKLRQALVEFEDVESAITCVSFASQLQPILVLGRQMYVNYSKSTEINRDFSSSASVGQTPTNILLFTIINAIHPVNVETVKKISQQHAEVQRIVIFHKNGLQALVEFLTIDDAQNVQQALNGCDIFAGCCTLKIDFSKTGRLNVHANTTETYD 317
            D H  P S VVH R + DG  E DLV+ ++ FG I  + +MPK RQALVEFEDV  A   V++A+  Q I + G   +VNYS S +I+R   S  S  ++  ++LLFTI+N I+ +  + +  I      VQRIVIF KNG+QA+VEF ++  AQ  + +LNG DI++GCCTLKI+++K  RLNV  N  +T+D
Sbjct:   94 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQ-IYIAGHPAFVNYSTSQKISRPGDSDDS--RSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284

HSP 2 Score: 160.614 bits (405), Expect = 1.635e-41
Identity = 92/215 (42.79%), Postives = 124/215 (57.67%), Query Frame = 0 
Query:  557 VAMVYGVNSERMNCDHLFNLFCLYGNVVKVKTLVNKPGAAMIQYTDKMSTDISIRNLNNLTLFGQKFQLSFSKHPFIADASQVTPLFDGSPSAVSYADSRNNRFKYIPGGVDIFSRIHPPSKVLHYFNAPPDCSEDHLKQVFHSLGAEIPIKQATFSKSNGKSSSGLLEFSSVPTAVEALILANHFTMQRDIRIEDPFQMLDKGGAAYTLKLAFS 771
            V MVYG++  +MNCD +FN+FCLYGNV KVK + +KPGAAM++  D  + D +I +LNN  +FGQK  +  SK P I    Q   L DGS S   +++SRNNRF          +RI  PS VLH+FNAP + +E++  ++   LG + P     FS  + +SSSGLLE+ S   A+E L   NH+ M+              G   YTLKL FS
Sbjct:  383 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIM-PGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK--NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKN-----------PNGPYPYTLKLCFS 583
The following BLAST results are available for this feature:
BLAST of TCONS_00067462-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPL1.805e-4746.39Heterogeneous nuclear ribonucleoprotein L OS=Homo ... [more]
back to top