TCONS_00067435-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067435-protein
Unique NameTCONS_00067435-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length197

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067435-protein ID=TCONS_00067435-protein|Name=TCONS_00067435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MNKELKKKEKKMSFRGRGGGRGGRGGRGGGRGGRGGFRQQDYGPPETVTE
IGHLLHPCEGDMVLKCTNENVPYFNAPIFLENKQQIGKVDEIFGPITEFY
FSVKISDGMNADSFKKLQKFFIDPMKLLPLSRFLSRNTRGGGRGRGGRGG
RGGGRGGGRGGGRGGFTPRGRGGRGGGGFRGGRGGGGFRGGRGRGRF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042124XLOC_042124Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067435TCONS_00067435Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR021154H/ACA_rnp_Gar1
IPR009000Transl_B-barrel
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
Vocabulary: Cellular Component
TermDefinition
GO:0031429box H/ACA snoRNP complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0031429 box H/ACA snoRNP complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.10.230coord: 44..135
e-value: 2.0E-34
score: 116.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 36..135
e-value: 1.6E-37
score: 128.5
IPR021154H/ACA ribonucleoprotein complex, subunit Gar1PRODOMPD020235coord: 51..136
e-value: 3.0E-30
score: 327.0
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 49..122

Blast
[Close]
BLAST of TCONS_00067435-protein vs. Swiss-Prot (Human)
Match: GAR1 (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.602e-45
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0 
Query:   40 QDYGPPETVTEIGHLLHPCEGDMVLKCT-NEN-VPYFNAPIFLENKQQIGKVDEIFGPITEFYFSVKISDGMNADSFKKLQKFFIDPMKLLPLSRFLSR 136
            QD GPPE V  +G  LHPCE D+V KCT +EN VPYFNAP++LENK+QIGKVDEIFG + +FYFSVK+S+ M A SFKKLQKF+IDP KLLPL RFL R
Sbjct:   62 QDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPR 160
The following BLAST results are available for this feature:
BLAST of TCONS_00067435-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAR11.602e-4570.71H/ACA ribonucleoprotein complex subunit 1 OS=Homo ... [more]
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