TCONS_00067100-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067100-protein
Unique Name	TCONS_00067100-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1214

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067100-protein ID=TCONS_00067100-protein|Name=TCONS_00067100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1214bp
LSNLFHCFSLDFQMAKNNEDFLTFPTSKTFIAIQSADEIFLADLATEELR
IVLPTLVRTIYHETKSSKNQQFKTFQDGIYKCIHHFSDVENLLSILKIDF
KTVLDDVSNEQQLRRKANSNQYKESQHHALLLHYEGSSPSQRMRIVLSEI
LRISMQLKDGLESNYQLDDCELFEKSVYMVEISDMLCIAFSELPYLLSAP
DISEVFLRLPHGCWLLCKLVVNNPDCFDVVCSSILAHAKPSGEATADMET
LTRMKTLKLLCEMNPQYRKILRAECVSSSKLAGLSIELTINSTQSDSGLD
LVSFFTGLLLASSSKTKEWLSDYIKHVQKDIKENQRENTLVLFKRQLVKE
MKMVISTLNANTPQSTGDETMGEGGAVVARGDSNPTMQGISIMRLYCAFK
TIAGFKFSQEESEYLIDLITCIPCDSNDVSIRFIVVGLCTLVACAFLVST
PEREQKVTHWLRQLIEKSSTYQQEGSPSYGETLLLIAIHFHGHTLEPIID
LVASTLGIKLRPASLTKLKLLFTQTIFPEKVIAEHALTVPVTKNLNGNLR
TFLPVHCIHQLLKSRVFTKYSISVKEWLFKQILQCGQPVHPLMMGLLETY
VLAIVKTMNISKTTKQQRMSALQPFPEEDILAVFDPHSTVECCDKMTSQI
LLMMFSLLYQNALLDNMRTLVNNAKRPQEYSTHLYSIIPIKQLLMEVRSN
ERSYGHIYPCLLRLLTTHYPSLCLVEDWIDEEEEAQIVSTNQNVPRVMVD
DSLLELFEPALEYHDTQKVITKLSRLVMLQPTLLIPHQDLVIDLLPKMLE
KDVPRKIQLLVTKLWMKLNVVIPRRLLHRTVNVLRYQPENIKYSWERTCE
TTDEEIQKDPLIVLRCDKRIFRSPPLFGILLRTLRGYLTASRGLLQHHIL
SNPLNGASRKAEKVLSKEKDRLELQSALVHAQESAALQILLEICLPSELE
KKFHDYTSKSTLREIQSQVCCYLHQSFISDPTIAKLLHYQGYSADLLPMT
TTGVPSIHICIDFVSELMNQPYLEKQLFAVQLISYLSLQYPIPKSFSMSR
YVIQQMKDLLCALPVAKRNQFFVTALCSLQRICKAFPPIREEVVALLLQI
GRIAISQQNKTSLTVSSSIRLRDEKLDDEENEEKYEEDFEMDIDGDEKPV
KNNTSLDRGNHKDSRNKFLKYCSSKELVNETERTFQIITNFSLNEKLSLT
SESNISVNEISKKI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041924	XLOC_041924	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067100	TCONS_00067100	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR026236	Int2_metazoa
IPR029321	INTS2

Vocabulary: **Cellular Component**
Term	Definition
GO:0032039	integrator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0016180	snRNA processing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016180	snRNA processing
cellular_component	GO:0032039	integrator complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026236	Integrator complex subunit 2, metazoa	PRINTS	PR02105	INTSUBUNIT2	coord: 174..191 score: 39.92 coord: 133..153 score: 38.62 coord: 313..331 score: 23.59 coord: 555..575 score: 63.49 coord: 392..411 score: 53.15 coord: 521..546 score: 60.83 coord: 480..506 score: 58.85
IPR029321	Integrator complex subunit 2	PFAM	PF14750	INTS2	coord: 41..1108 e-value: 0.0 score: 1070.9

Blast

[Close]

BLAST of TCONS_00067100-protein vs. Swiss-Prot (Human)
Match: INT2 (Integrator complex subunit 2 OS=Homo sapiens GN=INTS2 PE=1 SV=2)

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 430/1144 (37.59%), Postives = 667/1144 (58.30%), Query Frame = 0

Query:   22 LTFPTSKTFIAIQSADEIFLADLATEELRIVLPTLVRTIYHETKSSKNQQFKTFQDGIYKCIHHFSDVENLLSILKIDFKTVLDDVSNEQQLRRKANSNQYKE---SQ-HHALLLHYEGSSPSQRMRIVLSEILRISMQLKDGLESNYQLDDCELFEKSVYMVEISDMLCIAFSELPYLLSAPDISEVFLRLPHGCWLLCKLVVNNPDCFDVVCSSILAHAKPSGEATADMETLTRMKTLKLLCEMNPQYRKILRAECVSSSKLAGLSIELTINSTQS----DSGLDLVSFFTGLLLASSSKTKEWLSDYIKHVQKDIKENQRENTLVLFKRQLVKEMKMVISTLNANTPQSTGDETMGEGGAVVARGDSNPTMQGISIMRLYCAFKTIAGFKFSQEESEYLIDLITCIPCDSNDVSIRFIVVGLCTLVACAFLVSTPEREQKVTHWLRQLIEKSSTYQQEG--SPSYGETLLLIAIHFHGHTLEPIIDLVASTLGIKL--RPASLTKLKLLFTQTIFPEKVIAEHALTVPVTKNLNGNLRTFLPVHCIHQLLKSRVFTKYSISVKEWLFKQILQCGQPVHPLMMGLLETYVLAIVKTMNISKTTKQQRMSALQPFPEEDILAVFDPHSTVECCDKM--------TSQILLMMFSLLYQNALLDNMRTLVNNAKRPQEYSTHLYSIIPIKQLLMEVRSNERSYGHIYPCLLRLLTTHYPSLCLVEDWIDEEEEAQIVSTNQNVPRVMVDDS--------LLELFEPALEYHDTQKVITKLSRLVMLQPTLLIPHQDLVIDLLPKMLEKDVPRKIQLLVTKLWMKLNVVIPRRLLHRTVNVLRYQPENIKYSWERTCETTDEEIQKDPLIVLRCDKRIFRSPPLFGILLRTLRGYLTASRGLLQHHILSNPLNGASRKAEKVLSKEKD-----RLELQSALVHAQESAALQILLEICLPSELEKK--------FHDYTSKST------------------LREIQSQVCCYLHQSFISDPTIAKLLHYQGYSADLLPMTTTGVPSIHICIDFVSELMNQPYLEKQLFAVQLISYLSLQYPIPKSFSMSRYVIQQMKDLLCALPVAKRNQFFVTALCSLQRICKAFPPIREEVVALLLQIGRIAIS 1106
            L F +   F A+Q  D + LA L+  ELR++LP LVR       + ++Q +   +  I + +     V +++++L +DF  +  D S EQQLR K      +    SQ  H L L +E S   +R+R+VLSE+L I  ++ +     +     ELFE  VY+ E +D+LCI  +ELP LL   D++E  L + +G W LC LV N PD F+ VC  ++ + +   E +  +    R   L+ LC+MNP     +R   V    L GL + LT++ T++    D   DLV F +GLLL +++K + W   +I++ Q+  +E    + L   +RQL+ E+  ++ T+ +       D  M    +V +       ++  +++RLYCA   IAG K ++EE+E L+ L+T  P  +    +RF+ +  C L+A + LVSTPE+EQ +  WL  +I++ + ++     S S+GE LLL+A++FH + L  IIDLV STLG+K+  +P+SL+++K +FTQ IF E+V+  HA+ VPVT NL+ N+  FLP+HCI+QLL+SR FTK+ +S+K+W+++Q+ +   P+HP ++ L++ Y+ +I     ++  +K    +  QP  E++IL +F     V   D +        T+Q+L++ + L Y+ ALL N +TL    ++P+ YS+ L   IPIK L+ + +  ++  G ++  LLRLL T+YP LC+V+DWI EEE   I  T+  + R+++ ++        L E F  A+  ++TQ V+  +  L +L  + LIP+ +++   + ++L   VPR+I   V KLWM LN V+PRRL   TVN L  QP +IK+   R  + T  ++  DPLIVLRCD+R+ R PPL  I L  L GYL AS+  L  H+     +  S+     L  + D     R EL++AL+ AQ+SAA+QILLEICLP+E EK           +  S  T                  LRE+Q  +CC LHQ +I+DP IAKL+H+QGY  +LLP+T  G+PS+HIC+DF+ EL+ QP LEKQ+FA+QL+S+L +QY +PKS S++R  +  M  LL  L  AKR  FF+  L SL   C+AFPP+ E++++LL+QIG++  S
Sbjct:   15 LQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALC-APADQSQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVSQLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSES-NGEFFFKSSELFESPVYLEEAADVLCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES--LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVCFVSGLLLGTNAKVRTWFGTFIRNGQQRKRETS-SSVLWQMRRQLLLELMGILPTVRSTRIVEEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRP-PATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEMLLLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPVTSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYINSI-----LTPASKSNPEATNQPVTEQEILNIFQ---GVIGGDNIRLNQRFSITAQLLVLYYILSYEEALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPHLCIVDDWICEEE---ITGTDALLRRMLLTNNAKNHSPKQLQEAFS-AVPVNNTQ-VMQIIEHLTLLSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNAL--QP-SIKFV--RQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETEQDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPDSLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGYPCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLAVNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCAS 1134

The following BLAST results are available for this feature:

BLAST of TCONS_00067100-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067100-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
INT2	0.000e+0	37.59	Integrator complex subunit 2 OS=Homo sapiens GN=IN...	[more]

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TCONS_00067100-protein (polypeptide) - C. hemisphaerica