TCONS_00066281-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066281-protein
Unique NameTCONS_00066281-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066281-protein ID=TCONS_00066281-protein|Name=TCONS_00066281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQ
IIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPN
YAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGIRELFEQEPPKAPRKTR
GELYKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041483XLOC_041483Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066281TCONS_00066281Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009360Isy1
Vocabulary: Biological Process
TermDefinition
GO:0000350generation of catalytic spliceosome for second transesterification step
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000350 generation of catalytic spliceosome for second transesterification step
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..156
NoneNo IPR availableSUPERFAMILY140102ISY1 domain-likecoord: 29..103
IPR009360Pre-mRNA-splicing factor Isy1PFAMPF06246Isy1coord: 1..156
e-value: 3.0E-72
score: 243.1

Blast
[Close]
BLAST of TCONS_00066281-protein vs. Swiss-Prot (Human)
Match: ISY1 (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.241e-76
Identity = 114/155 (73.55%), Postives = 127/155 (81.94%), Query Frame = 0 
Query:    1 MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQIIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPNYAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGIRELFEQEPPKAPRKTRGELYK 155
            MAR+AEKAM  L+R+      E K  V  RRPFLA+EC  L +AEKWR QII EISKKV+QIQNAG+GEFRIRDLNDEINKLLREK HWE RI +L GP+Y KVGP+MLDHEGKE+PGNRGYKYFGAAKDLPG+RELFE+EP   PRKTR EL K
Sbjct:    1 MARNAEKAMTALARFRQAQLEEGK--VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMK 153
The following BLAST results are available for this feature:
BLAST of TCONS_00066281-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISY13.241e-7673.55Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapi... [more]
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