TCONS_00066109-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066109-protein
Unique NameTCONS_00066109-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066109-protein ID=TCONS_00066109-protein|Name=TCONS_00066109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MEREETRSYSIEKPRHASLLDRNNNIQHHDKSSDISHNTSDNENDRVVRQ
WLQETVTVVKPLSDKDDRNETLCRVCGDISSGRHYGQYTCDGCSGFFMRS
VRKNMTYRCKGNKSCIVDKKRRNQCQACRFEKCLEVKMNRYAVQQERQPN
NHFSMQHHSFHGLPPYLYPRSVGYYPPPPPPPRIGLTRIGGSSLPTMHDI
RERHREFRINYQHASTSSSLRQSPGCVSPLPTTTKIQTPVSPPPRLIEAT
KIKTEDAVPVQAPEKLEDIAARLLYHTIKWARSVPAFTELSISDQIRLLE
NSWSDIFVLFAFQWKLLIDSGEITKSIEERLKDDENGHIRDDLSAELKHL
QEMAGKFHSFHVSEDEFIYLKSVVLFKPEVPGLLDPRHIERCQDRAQIML
RDHVVACTPEQPARFGKLLLLLPEVKRITPKTIEEILYQQNLGTFSFDTL
LADLFKP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041384XLOC_041384Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066109TCONS_00066109Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 417..434
score: 32.72
coord: 269..290
score: 31.98
coord: 134..144
score: 40.65
coord: 360..375
score: 25.97
coord: 290..306
score: 41.05
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 130..138
score: 50.76
coord: 89..104
score: 53.12
coord: 122..130
score: 62.59
coord: 73..89
score: 53.42
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 70..141
e-value: 1.8E-29
score: 113.9
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 72..140
e-value: 2.6E-27
score: 95.0
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 73..99
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 70..145
score: 19.134
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 268..429
e-value: 3.7E-28
score: 109.5
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 268..437
e-value: 1.4E-23
score: 83.5
IPR000536Nuclear hormone receptor, ligand-binding domainSUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 209..226
coord: 119..154
coord: 254..456
NoneNo IPR availableGENE3D1.10.565.10coord: 133..457
e-value: 3.3E-58
score: 196.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..243
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 71..144
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 65..132
e-value: 6.1E-29
score: 99.6

Blast
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BLAST of TCONS_00066109-protein vs. Swiss-Prot (Human)
Match: NR2E3 (Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 5.703e-77
Identity = 148/391 (37.85%), Postives = 201/391 (51.41%), Query Frame = 0 
Query:   73 CRVCGDISSGRHYGQYTCDGCSGFFMRSVRKNMTYRCK-GNKSCIVDKKRRNQCQACRFEKCLEVKMNRYAVQQERQPNN----HFSMQHHSFHGLPPYLY--PRSVGYYPPPPPPPRIGLTRIGGSSLPTMHDIRERHREFRINYQHASTSSSLRQSPGCVSPLPTTTKIQTPVSPPPRLIEATKIKTEDAVPVQAPEKLEDIAARLLYHTIKWARSVPAFTELSISDQIRLLENSWSDIFVLFAFQWKLLIDSGEITKSIEERLKDDENGHIRDDLSAELKHLQEMAGKFHSFHVSEDEFIYLKSVVLFKPEVPGLLDPRHIERCQDRAQIMLRDHVVACTPEQPARFGKLLLLLPEVKRITPKTIEEILYQQNLGTFSFDTLLADLFK 456
            CRVCGD SSG+HYG Y C+GCSGFF RSVR+ + YRC+ G   C VDK  RNQCQACR +KCL+  MN+ AVQ ERQP +    H      +    P  L   P   G  P  P P               M   R     F  +   A T + L        P      I    + P          +   +     + + + +ARLL+  +KWA+++P F+ L   DQ+ LLE +WS++F+L A QW L +DS  +    E        G +    S E + LQE   +F +  V   EF  +K++VLFKPE  GL DP H+E  QD++Q+ML  H  A  P QP RFGKLLLLLP ++ IT + IE + +++ +G    + LL D+FK
Sbjct:   47 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTP---------------MSAARALGHHFMASLITAETCAKLE-------PEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRL-TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFK 409
The following BLAST results are available for this feature:
BLAST of TCONS_00066109-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E35.703e-7737.85Photoreceptor-specific nuclear receptor OS=Homo sa... [more]
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