TCONS_00066099-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066099-protein
Unique NameTCONS_00066099-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066099-protein ID=TCONS_00066099-protein|Name=TCONS_00066099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MEIQEQRHPDPAMPISQQLKFECNGNCHRFSHHHKQILPQQNSHCNCRNK
KIQSLSRSTNHHLIQNSKEVPGEESNTLRNTDKEKPSDSLTTMPRTPETA
PSDSKMTVQLSQQLAVERKRNDELCLRIEQLQITLESADINYEILKQKFM
EQFQTFQDELNILKRNYHKHTESGPNSPSLGRRRRAINTVSEQQNELKIL
TNTVEENTRNIDDIDLRLQIHENTRYNGRILWKIDDFHSRRQQVLSGELH
ALHSAPCYSSDYGYKFCLRAYLNGDGVGEGTHVSLFLVVMKSDHDRVLEW
PFQKKVKMTLINQQNRRRDHTEVMTPNKDSASFQRPKNDTNVASGCPLFM
ALDRLDAEGFVKEDVLFFDVTVE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041380XLOC_041380Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066099TCONS_00066099Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..210
NoneNo IPR availableCOILSCoilCoilcoord: 121..166
NoneNo IPR availableGENE3D1.20.5.50coord: 83..216
e-value: 0.0013
score: 17.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..107
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 232..355
e-value: 5.0E-10
score: 49.3
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 227..372
score: 17.425
IPR008974TRAF-likeGENE3D2.60.210.10coord: 217..373
e-value: 1.8E-33
score: 115.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 226..372

Blast
[Close]
BLAST of TCONS_00066099-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 3.120e-50
Identity = 80/234 (34.19%), Postives = 137/234 (58.55%), Query Frame = 0 
Query:  151 EQFQTFQDELNILKRNYHKHTESGPNSPSLGRRRRAINTVSEQQNELKILTNTVEENTRNID-----------DIDLRLQIHENTRYNGRILWKIDDFHSRRQQVLSGELHALHSAPCYSSDYGYKFCLRAYLNGDGVGEGTHVSLFLVVMKSDHDRVLEWPFQKKVKMTLINQQNRRRDHTEVMTPNKDSASFQRPKNDTNVASGCPLFMALDRLDAEGFVKEDVLFFDVTVE 373
            E+ +    E+   ++N+ +      +  SL  R   + +V +   ++   T  +E      D           D+DLR Q+ E   YNG ++WKI D+  R+Q+ + G+  +L+S P Y+  +GYK C R YLNGDG+G+GTH+SLF V+M+ ++D +L WPF++KV + L++Q + RR   +   P+ +S+SF++P  + N+ASGCP+F+A   L+   ++K+D +F  V V+
Sbjct:  328 EKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00066099-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF33.120e-5034.19TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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